The Papillomavirus Episteme: a central resource for papillomavirus sequence data and analysis
作者： Sandhya Xirasagar , Sandya Bandaru , Vivek Gopalan , Yasmin Mohamoud , Yentram Huyen
DOI: 10.1093/NAR/GKS984
关键词:
摘要: The goal of the Papillomavirus Episteme (PaVE) is to provide an integrated resource for analysis papillomavirus (PV) genome sequences and related information. PaVE a freely accessible, web-based tool (http://pave.niaid.nih.gov) created around relational database, which enables storage, exchange sequence From design perspective, adopts Open Source software approach stresses integration reuse existing tools. Reference PV have been extracted from publicly available databases reannotated using custom-created tool. To date, contains 241 annotated genomes, 2245 genes regions, 2004 protein 47 structures, users can explore, analyze or download. provides scientists with data tools needed accelerate scientific progress study treatment diseases caused by PVs.
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Lisa Ho, Shih Yen Chan, Robert D Burk, BC Das, Kei Fujinaga, Joseph P Icenogle, Tomas Kahn, Nancy Kiviat, Wayne Lancaster, Penelope Mavromara-Nazos, None, The genetic drift of human papillomavirus type 16 is a means of reconstructing prehistoric viral spread and the movement of ancient human populations. Journal of Virology. ,vol. 67, pp. 6413- 6423 ,(1993) , 10.1128/JVI.67.11.6413-6423.1993
Santiago García-Vallvé, Ángel Alonso, Ignacio G. Bravo, Papillomaviruses: different genes have different histories Trends in Microbiology. ,vol. 13, pp. 514- 521 ,(2005) , 10.1016/J.TIM.2005.09.003
Yiming Bao, Scott Federhen, Detlef Leipe, Vyvy Pham, Sergei Resenchuk, Mikhail Rozanov, Roman Tatusov, Tatiana Tatusova, National center for biotechnology information viral genomes project. Journal of Virology. ,vol. 78, pp. 7291- 7298 ,(2004) , 10.1128/JVI.78.14.7291-7298.2004
Dianna E. Wilkinson, Sally A. Baylis, David Padley, Alan B. Heath, Morag Ferguson, Sonia R. Pagliusi, Wim G. Quint, Cosette M. Wheeler, , Establishment of the 1st World Health Organization international standards for human papillomavirus type 16 DNA and type 18 DNA. International Journal of Cancer. ,vol. 126, pp. 2969- 2983 ,(2010) , 10.1002/IJC.25039
Hans-Ulrich Bernard, Robert D. Burk, Zigui Chen, Koenraad van Doorslaer, Harald zur Hausen, Ethel-Michele de Villiers, Classification of Papillomaviruses (PVs) Based on 189 PV Types and Proposal of Taxonomic Amendments Virology. ,vol. 401, pp. 70- 79 ,(2010) , 10.1016/J.VIROL.2010.02.002
Véronique Bouvard, Robert Baan, Kurt Straif, Yann Grosse, Béatrice Secretan, Fatiha El Ghissassi, Lamia Benbrahim-Tallaa, Neela Guha, Crystal Freeman, Laurent Galichet, Vincent Cogliano, None, A review of human carcinogens--Part B: biological agents Lancet Oncology. ,vol. 10, pp. 321- 322 ,(2009) , 10.1016/S1470-2045(09)70096-8
S Altschula, Warren Gisha, Webb Millerb, E Meyersc, D Lipmana, None, Basic Local Alignment Search Tool Journal of Molecular Biology. ,vol. 215, pp. 403- 410 ,(1990) , 10.1016/S0022-2836(05)80360-2
Aloysius J. Klingelhutz, Ann Roman, Cellular transformation by human papillomaviruses: Lessons learned by comparing high- and low-risk viruses Virology. ,vol. 424, pp. 77- 98 ,(2012) , 10.1016/J.VIROL.2011.12.018
Annabel Rector, Philippe Lemey, Ruth Tachezy, Sara Mostmans, Shin-Je Ghim, Koenraad Van Doorslaer, Melody Roelke, Mitchell Bush, Richard J Montali, Janis Joslin, Robert D Burk, Alfred B Jenson, John P Sundberg, Beth Shapiro, Marc Van Ranst, Ancient papillomavirus-host co-speciation in Felidae Genome Biology. ,vol. 8, pp. 1- 12 ,(2007) , 10.1186/GB-2007-8-4-R57
Helen Trottier, Eduardo L. Franco, The epidemiology of genital human papillomavirus infection. Vaccine. ,vol. 24, ,(2006) , 10.1016/J.VACCINE.2005.09.054