Automated parallel DNA sequencing on multiple channel microchips.

作者: S. Liu , H. Ren , Q. Gao , D. J. Roach , R. T. Loder

DOI: 10.1073/PNAS.100113197

关键词:

摘要: We report automated DNA sequencing in 16-channel microchips. A microchip prefilled with sieving matrix is aligned on a heating plate affixed to movable platform. Samples are loaded into sample reservoirs by using an eight-tip pipetting device, and the chip docked array of electrodes focal plane four-color scanning detection system. Under computer control, high voltage applied appropriate programmed sequence that injects separates samples. An integrated confocal fluorescent detector automatically scans all 16 channels. The system routinely yields more than 450 bases 15 min In best case base-calling program, 543 have been called at accuracy >99%. Separations, including loading injection, normally completed less 18 min. advantages capillary electrophoresis chips include uniform signal intensity tolerance template concentration. To understand fundamentals these unique features we developed theoretical treatment cross-channel injection call differential concentration effect. present experimental evidence consistent predictions theory.

参考文章(38)
J. C. Mullikin, DNA SEQUENCING:Sequencing the Genome, Fast Science. ,vol. 283, pp. 1867- 1868 ,(1999) , 10.1126/SCIENCE.283.5409.1867
Peter C. Simpson, Adam T. Woolley, Richard A. Mathies, Microfabrication Technology for the Production of Capillary Array Electrophoresis Chips Biomedical Microdevices. ,vol. 1, pp. 7- 26 ,(1998) , 10.1023/A:1009922004301
Andreas Manz, D.Jed Harrison, Elisabeth M.J. Verpoorte, James.C. Fettinger, Aran Paulus, Hans Lüdi, H.Michael Widmer, Planar chips technology for miniaturization and integration of separation techniques into monitoring systems. Capillary electrophoresis on a chip Journal of Chromatography A. ,vol. 593, pp. 253- 258 ,(1992) , 10.1016/0021-9673(92)80293-4
Stellan Hjertén, High-performance electrophoresis : Elimination of electroendosmosis and solute adsorption Journal of Chromatography A. ,vol. 347, pp. 191- 198 ,(1985) , 10.1016/S0021-9673(01)95485-8
Lloyd M. Smith, Jane Z. Sanders, Robert J. Kaiser, Peter Hughes, Chris Dodd, Charles R. Connell, Cheryl Heiner, Stephen B. H. Kent, Leroy E. Hood, Fluorescence detection in automated DNA sequence analysis Nature. ,vol. 321, pp. 674- 679 ,(1986) , 10.1038/321674A0
D. J. Harrison, K. Fluri, K. Seiler, Z. Fan, C. S. Effenhauser, A. Manz, Micromachining a Miniaturized Capillary Electrophoresis-Based Chemical Analysis System on a Chip Science. ,vol. 261, pp. 895- 897 ,(1993) , 10.1126/SCIENCE.261.5123.895
Lester D. Hutt, Daniel P. Glavin, Jeffrey L. Bada, Richard A. Mathies, Microfabricated Capillary Electrophoresis Amino Acid Chirality Analyzer for Extraterrestrial Exploration Analytical Chemistry. ,vol. 71, pp. 4000- 4006 ,(1999) , 10.1021/AC9903959
Larry C. Waters, Stephen C. Jacobson, Natalia Kroutchinina, Julia Khandurina, Robert S. Foote, J. Michael Ramsey, Multiple Sample PCR Amplification and Electrophoretic Analysis on a Microchip Analytical Chemistry. ,vol. 70, pp. 5172- 5176 ,(1998) , 10.1021/AC980447E