Peak Tree: A New Tool for Multiscale Hierarchical Representation and Peak Detection of Mass Spectrometry Data

作者: Peng Zhang , Houqiang Li , Honghui Wang , Stephen T.C. Wong , Xiaobo Zhou

DOI: 10.1109/TCBB.2009.56

关键词:

摘要: … Then, there is a match between a common peak on mc m/z and a peak on mp if jmc Ą mpj r Į mc. Consequently, if there is a match between a peak node n and a common peak c, the …

参考文章(31)
Tadayoshi Fushiki, Hironori Fujisawa, Shinto Eguchi, Identification of biomarkers from mass spectrometry data using a "common" peak approach BMC Bioinformatics. ,vol. 7, pp. 358- 358 ,(2006) , 10.1186/1471-2105-7-358
Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert, A fast and accurate algorithm for the quantification of peptides from mass spectrometry data research in computational molecular biology. pp. 473- 487 ,(2007) , 10.1007/978-3-540-71681-5_33
Lloyd A. Smith, Mark A. Hall, Feature subset selection: a correlation based filter approach international conference on neural information processing. pp. 855- 858 ,(1997)
Kevin R. Coombes, Keith A. Baggerly, Ryuji Kobayashi, John M. Koomen, Jeffrey S. Morris, Understanding the characteristics of mass spectrometry data through the use of simulation Cancer Informatics. ,vol. 1, pp. 41- 52 ,(2005) , 10.4137/CIN.S0
Alexander Hinneburg, Daniel A. Keim, An efficient approach to clustering in large multimedia databases with noise knowledge discovery and data mining. pp. 58- 65 ,(1998)
Peng Zhang, Houqiang Li, Xiaobo Zhou, Stephen Wong, Tuan D. Pham, Xiaobo Zhou, Peak tree and peak detection for mass spectrometry data COMPUTATIONAL MODELS FOR LIFE SCIENCES—CMLS '07: 2007 International Symposium on Computational Models of Life Sciences. ,vol. 952, pp. 127- 136 ,(2007) , 10.1063/1.2816616
Jean Babaud, Andrew P. Witkin, Michel Baudin, Richard O. Duda, Uniqueness of the Gaussian Kernel for Scale-Space Filtering IEEE Transactions on Pattern Analysis and Machine Intelligence. ,vol. PAMI-8, pp. 26- 33 ,(1986) , 10.1109/TPAMI.1986.4767749
Felix J. Herrmann, Singularity Characterization by Monoscale Analysis: Application to Seismic Imaging Applied and Computational Harmonic Analysis. ,vol. 11, pp. 64- 88 ,(2001) , 10.1006/ACHA.2000.0349
Melanie Hilario, Alexandros Kalousis, Christian Pellegrini, Markus Müller, Processing and classification of protein mass spectra Mass Spectrometry Reviews. ,vol. 25, pp. 409- 449 ,(2006) , 10.1002/MAS.20072
Victor P. Andreev, Tomas Rejtar, Hsuan-Shen Chen, Eugene V. Moskovets, Alexander R. Ivanov, Barry L. Karger, A universal denoising and peak picking algorithm for LC-MS based on matched filtration in the chromatographic time domain. Analytical Chemistry. ,vol. 75, pp. 6314- 6326 ,(2003) , 10.1021/AC0301806