Urothelial cancer gene regulatory networks inferred from large-scale RNAseq, Bead and Oligo gene expression data

作者: Ricardo de Matos Simoes , Sabine Dalleau , Kate E Williamson , Frank Emmert-Streib

DOI: 10.1186/S12918-015-0165-Z

关键词:

摘要: Background Urothelial pathogenesis is a complex process driven by an underlying network of interconnected genes. The identification novel genomic target regions and gene targets that drive urothelial carcinogenesis crucial in order to improve our current limited understanding cancer (UC) on the molecular level. inference genome-wide regulatory networks (GRN) from large-scale expression data provides promising approach for detailed investigation structure associated carcinogenesis.

参考文章(85)
Jan M. Hanley, Badrinath R. Konety, Christopher S. Saigal, , Karim Chamie, Mark S. Litwin, Jeffrey C. Bassett, Timothy J. Daskivich, Julie Lai, Recurrence of high-risk bladder cancer: A population-based analysis Cancer. ,vol. 119, pp. 3219- 3227 ,(2013) , 10.1002/CNCR.28147
Mark Newman, Networks: An Introduction ,(2010)
Peter Langfelder, Steve Horvath, WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics. ,vol. 9, pp. 559- 559 ,(2008) , 10.1186/1471-2105-9-559
Laurence D. Hurst, Csaba Pál, Martin J. Lercher, The evolutionary dynamics of eukaryotic gene order Nature Reviews Genetics. ,vol. 5, pp. 299- 310 ,(2004) , 10.1038/NRG1319
Heejei Yoon, Hanna Lee, Hee Jin Kim, Kwon Tae You, Young Nyun Park, Hoguen Kim, Hyunki Kim, Tudor domain-containing protein 4 as a potential cancer/testis antigen in liver cancer. Tohoku Journal of Experimental Medicine. ,vol. 224, pp. 41- 46 ,(2011) , 10.1620/TJEM.224.41
A. E. EATON, Did Flowers Exist during the Carboniferous Epoch Nature. ,vol. 20, pp. 315- 315 ,(1879) , 10.1038/020315A0
Frank Emmert-Streib, Ricardo de Matos Simoes, Paul Mullan, Benjamin Haibe-Kains, Matthias Dehmer, The gene regulatory network for breast cancer: integrated regulatory landscape of cancer hallmarks Frontiers in Genetics. ,vol. 5, pp. 15- 15 ,(2014) , 10.3389/FGENE.2014.00015
Melanie Stefan, Nicolas Le Novere, Molecules for memory: modelling CaMKII BMC Systems Biology. ,vol. 1, pp. 40- ,(2007) , 10.1186/1752-0509-1-S1-P40
Andreas Zanzoni, Luisa Montecchi-Palazzi, Michele Quondam, Gabriele Ausiello, Manuela Helmer-Citterich, Gianni Cesareni, MINT: a Molecular INTeraction database. FEBS Letters. ,vol. 513, pp. 135- 140 ,(2002) , 10.1016/S0014-5793(01)03293-8