Benefits and Challenges of Rare Genetic Variation in Alzheimer’s Disease

作者: Detelina Grozeva , Salha Saad , Georgina E. Menzies , Rebecca Sims

DOI: 10.1007/S40142-019-0161-5

关键词:

摘要: It is well established that sporadic Alzheimer’s disease (AD) polygenic with common and rare genetic variation alongside environmental factors contributing to disease. Here, we review our current understanding of the architecture disease, paying specific attention susceptibility variants, explore some limitations in variant detection analysis. Rare has been shown robustly associate These include potentially damaging loss function mutations are easily modelled silico, vitro vivo, represent druggable targets. A number risk genes, including TREM2, SORL1 ABCA7 show multiple independent associations suggesting they may influence via mechanisms. With transcriptional regulation, inflammatory response modification protein production suggested be primary importance. We at beginning journey AD. Whole exome sequencing predominant technology choice. While fruitful, this introduced a challenges regard data integration. Ultimately future disease-associated identification lies whole genome projects will allow testing full range genomic variation.

参考文章(113)
Akinori Miyashita, Yanan Wen, Nobutaka Kitamura, Etsuro Matsubara, Takeshi Kawarabayashi, Mikio Shoji, Naoki Tomita, Katsutoshi Furukawa, Hiroyuki Arai, Takashi Asada, Yasuo Harigaya, Masaki Ikeda, Masakuni Amari, Haruo Hanyu, Susumu Higuchi, Masatoyo Nishizawa, Masaichi Suga, Yasuhiro Kawase, Hiroyasu Akatsu, Masaki Imagawa, Tsuyoshi Hamaguchi, Masahito Yamada, Takashi Morihara, Masatoshi Takeda, Takeo Takao, Kenji Nakata, Ken Sasaki, Ken Watanabe, Kenji Nakashima, Katsuya Urakami, Terumi Ooya, Mitsuo Takahashi, Takefumi Yuzuriha, Kayoko Serikawa, Seishi Yoshimoto, Ryuji Nakagawa, Yuko Saito, Hiroyuki Hatsuta, Shigeo Murayama, Akiyoshi Kakita, Hitoshi Takahashi, Haruyasu Yamaguchi, Kohei Akazawa, Ichiro Kanazawa, Yasuo Ihara, Takeshi Ikeuchi, Ryozo Kuwano, Lack of Genetic Association Between TREM2 and Late-Onset Alzheimer's Disease in a Japanese Population Journal of Alzheimer's Disease. ,vol. 41, pp. 1031- 1038 ,(2014) , 10.3233/JAD-140225
Stefan H. Lelieveld, Malte Spielmann, Stefan Mundlos, Joris A. Veltman, Christian Gilissen, Comparison of Exome and Genome Sequencing Technologies for the Complete Capture of Protein-Coding Regions Human Mutation. ,vol. 36, pp. 815- 822 ,(2015) , 10.1002/HUMU.22813
Tianxiao Huan, Qingying Meng, Mohamed A Saleh, Allison E Norlander, Roby Joehanes, Jun Zhu, Brian H Chen, Bin Zhang, Andrew D Johnson, Saixia Ying, Paul Courchesne, Nalini Raghavachari, Richard Wang, Poching Liu, International Consortium for Blood Pressure GWAS (ICBP), Christopher J O'Donnell, Ramachandran Vasan, Peter J Munson, Meena S Madhur, David G Harrison, Xia Yang, Daniel Levy, None, Integrative network analysis reveals molecular mechanisms of blood pressure regulation Molecular Systems Biology. ,vol. 11, pp. 799- 799 ,(2015) , 10.15252/MSB.20145399
Catherine F. Slattery, Jonathan A. Beck, Lorna Harper, Gary Adamson, Zeinab Abdi, James Uphill, Tracy Campbell, Ron Druyeh, Colin J. Mahoney, Jonathan D. Rohrer, Janna Kenny, Jessica Lowe, Kelvin K. Leung, Josephine Barnes, Shona L. Clegg, Melanie Blair, Jennifer M. Nicholas, Rita J. Guerreiro, James B. Rowe, Claudia Ponto, Inga Zerr, Hans Kretzschmar, Pierluigi Gambetti, Sebastian J. Crutch, Jason D. Warren, Martin N. Rossor, Nick C. Fox, John Collinge, Jonathan M. Schott, Simon Mead, R47H TREM2 variant increases risk of typical early-onset Alzheimer's disease but not of prion or frontotemporal dementia. Alzheimers & Dementia. ,vol. 10, pp. 602- 608 ,(2014) , 10.1016/J.JALZ.2014.05.1751
Elise Cuyvers, Karolien Bettens, Stéphanie Philtjens, Tim Van Langenhove, Ilse Gijselinck, Julie van der Zee, Sebastiaan Engelborghs, Mathieu Vandenbulcke, Jasper Van Dongen, Nathalie Geerts, Githa Maes, Maria Mattheijssens, Karin Peeters, Patrick Cras, Rik Vandenberghe, Peter P De Deyn, Christine Van Broeckhoven, Marc Cruts, Kristel Sleegers, None, Investigating the role of rare heterozygous TREM2 variants in Alzheimer's disease and frontotemporal dementia Neurobiology of Aging. ,vol. 35, ,(2014) , 10.1016/J.NEUROBIOLAGING.2013.09.009
Daniel L. Kober, Kelsey M. Wanhainen, Britney M. Johnson, David T. Randolph, Michael J. Holtzman, Tom J. Brett, Preparation, crystallization, and preliminary crystallographic analysis of wild-type and mutant human TREM-2 ectodomains linked to neurodegenerative and inflammatory diseases Protein Expression and Purification. ,vol. 96, pp. 32- 38 ,(2014) , 10.1016/J.PEP.2014.01.015
Monica K Wetzel-Smith, Julie Hunkapiller, Tushar R Bhangale, Karpagam Srinivasan, Janice A Maloney, Jasvinder K Atwal, Susan M Sa, Murat B Yaylaoglu, Oded Foreman, Ward Ortmann, Nisha Rathore, David V Hansen, Marc Tessier-Lavigne, Alzheimer's Disease Genetics Consortium, Richard Mayeux, Margaret Pericak-Vance, Jonathan Haines, Lindsay A Farrer, Gerard D Schellenberg, Alison Goate, Timothy W Behrens, Carlos Cruchaga, Ryan J Watts, Robert R Graham, None, A rare mutation in UNC5C predisposes to late-onset Alzheimer's disease and increases neuronal cell death Nature Medicine. ,vol. 20, pp. 1452- 1457 ,(2014) , 10.1038/NM.3736
Eva Louwersheimer, Alfredo Ramirez, Carlos Cruchaga, Tim Becker, Johannes Kornhuber, Oliver Peters, Stefanie Heilmann, Jens Wiltfang, Frank Jessen, Pieter Jelle Visser, Philip Scheltens, Yolande AL Pijnenburg, Charlotte E Teunissen, Frederik Barkhof, John C van Swieten, Henne Holstege, Wiesje M Van der Flier, Dementia Competence Network, Alzheimer's Disease Neuroimaging Initiative, None, The influence of genetic variants in SORL1 gene on the manifestation of Alzheimer's disease Neurobiology of Aging. ,vol. 36, pp. 1605- 1620 ,(2015) , 10.1016/J.NEUROBIOLAGING.2014.12.007
O. Zuk, S. F. Schaffner, K. Samocha, R. Do, E. Hechter, S. Kathiresan, M. J. Daly, B. M. Neale, S. R. Sunyaev, E. S. Lander, Searching for missing heritability: Designing rare variant association studies Proceedings of the National Academy of Sciences of the United States of America. ,vol. 111, pp. 201322563- ,(2014) , 10.1073/PNAS.1322563111
Jerome I. Rotter, Valur Emilsson, Christopher J. O'Donnell, Thor Aspelund, Andre G. Uitterlinden, Lenore J. Launer, Albert Hofman, Eric Boerwinkle, Bruce M. Psaty, Anita L. DeStefano, Philip Scheltens, Sudha Seshadri, John C. van Swieten, Vilmundur Gudnason, Wiesje M. van der Flier, M. Arfan Ikram, Cornelia M. van Duijn, Sven J. van der Lee, Henne Holstege, Tsz Hang Wong, Johanna Jakobsdottir, Joshua C. Bis, Vincent Chouraki, Jeroen G. J. van Rooij, Megan L. Grove, Albert V. Smith, Najaf Amin, Seung-Hoan Choi, Alexa S. Beiser, Melissa E. Garcia, Wilfred F. J. van IJcken, Yolande A. L. Pijnenburg, Eva Louwersheimer, Rutger W. W. Brouwer, Mirjam C. G. N. van den Hout, Edwin Oole, Gudny Eirkisdottir, Daniel Levy, PLD3 variants in population studies Nature. ,vol. 520, ,(2015) , 10.1038/NATURE14038