Deep sequencing reveals important roles of microRNAs in response to drought and salinity stress in cotton
作者： Fuliang Xie , Qinglian Wang , Runrun Sun , Baohong Zhang
DOI: 10.1093/JXB/ERU437
关键词:
摘要: Drought and salinity are two major environmental factors adversely affecting plant growth productivity. However, the regulatory mechanism is unknown. In this study, potential roles of small microRNAs (miRNAs) in cotton response to those stresses were investigated. Using next-generation deep sequencing, a total 337 miRNAs with precursors identified, comprising 289 known 48 novel miRNAs. Of these miRNAs, 155 expressed differentially. Target prediction, Gene Ontology (GO)-based functional classification, Kyoto Encyclopedia Genes Genomes (KEGG)-based enrichment show that might play drought through targeting series stress-related genes. Degradome sequencing analysis showed at least 55 predicted target genes further validated be regulated by 60 CitationRank-based literature mining was employed determinhe importance related stress. The NAC, MYB, MAPK families ranked top under context salinity, indicating their important for combat According associated top-ranked genes, including miR164, miR172, miR396, miR1520, miR6158, ghr-n24, ghr-n56, ghr-n59. Interestingly, 163 also identified 210 fibre development. These results will contribute stress-resistant breeding as well understanding
oup.com
ecu.edu
paperity.org
oxfordjournals.org参考文章(71)
Baohong Zhang, Qinglian Wang, MicroRNA-based biotechnology for plant improvement. Journal of Cellular Physiology. ,vol. 230, pp. 1- 15 ,(2015) , 10.1002/JCP.24685
Irina Mohorianu, Frank Schwach, Runchun Jing, Sara Lopez-Gomollon, Simon Moxon, Gyorgy Szittya, Karim Sorefan, Vincent Moulton, Tamas Dalmay, Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns Plant Journal. ,vol. 67, pp. 232- 246 ,(2011) , 10.1111/J.1365-313X.2011.04586.X
Liang Zhang, Dongmei Xi, Shanwei Li, Zheng Gao, Shuoli Zhao, Jing Shi, Changai Wu, Xingqi Guo, A cotton group C MAP kinase gene, GhMPK2 , positively regulates salt and drought tolerance in tobacco Plant Molecular Biology. ,vol. 77, pp. 17- 31 ,(2011) , 10.1007/S11103-011-9788-7
Min Wang, Qinglian Wang, Baohong Zhang, Response of miRNAs and their targets to salt and drought stresses in cotton (Gossypium hirsutum L.) Gene. ,vol. 530, pp. 26- 32 ,(2013) , 10.1016/J.GENE.2013.08.009
Lifeng Lin, Gary J Pierce, John E Bowers, James C Estill, Rosana O Compton, Lisa K Rainville, Changsoo Kim, Cornelia Lemke, Junkang Rong, Haibao Tang, Xiyin Wang, Michele Braidotti, Amy H Chen, Kristen Chicola, Kristi Collura, Ethan Epps, Wolfgang Golser, Corrinne Grover, Jennifer Ingles, Santhosh Karunakaran, Dave Kudrna, Jaime Olive, Nabila Tabassum, Eareana Um, Marina Wissotski, Yeisoo Yu, Andrea Zuccolo, Mehboob ur Rahman, Daniel G Peterson, Rod A Wing, Jonathan F Wendel, Andrew H Paterson, None, A draft physical map of a D-genome cotton species (Gossypium raimondii) BMC Genomics. ,vol. 11, pp. 395- 395 ,(2010) , 10.1186/1471-2164-11-395
Diana V Dugas, Bonnie Bartel, MicroRNA regulation of gene expression in plants Current Opinion in Plant Biology. ,vol. 7, pp. 512- 520 ,(2004) , 10.1016/J.PBI.2004.07.011
Fuliang Xie, Guiling Sun, John W. Stiller, Baohong Zhang, Genome-Wide Functional Analysis of the Cotton Transcriptome by Creating an Integrated EST Database PLOS ONE. ,vol. 6, ,(2011) , 10.1371/JOURNAL.PONE.0026980
Andrew H Paterson, Jonathan F Wendel, Heidrun Gundlach, Hui Guo, Jerry Jenkins, Dianchuan Jin, Danny Llewellyn, Kurtis C Showmaker, Shengqiang Shu, Joshua Udall, Mi-jeong Yoo, Robert Byers, Wei Chen, Adi Doron-Faigenboim, Mary V Duke, Lei Gong, Jane Grimwood, Corrinne Grover, Kara Grupp, Guanjing Hu, Tae-ho Lee, Jingping Li, Lifeng Lin, Tao Liu, Barry S Marler, Justin T Page, Alison W Roberts, Elisson Romanel, William S Sanders, Emmanuel Szadkowski, Xu Tan, Haibao Tang, Chunming Xu, Jinpeng Wang, Zining Wang, Dong Zhang, Lan Zhang, Hamid Ashrafi, Frank Bedon, John E Bowers, Curt L Brubaker, Peng W Chee, Sayan Das, Alan R Gingle, Candace H Haigler, David Harker, Lucia V Hoffmann, Ran Hovav, Donald C Jones, Cornelia Lemke, Shahid Mansoor, Mehboob ur Rahman, Lisa N Rainville, Aditi Rambani, Umesh K Reddy, Jun-kang Rong, Yehoshua Saranga, Brian E Scheffler, Jodi A Scheffler, David M Stelly, Barbara A Triplett, Allen Van Deynze, Maite FS Vaslin, Vijay N Waghmare, Sally A Walford, Robert J Wright, Essam A Zaki, Tianzhen Zhang, Elizabeth S Dennis, Klaus FX Mayer, Daniel G Peterson, Daniel S Rokhsar, Xiyin Wang, Jeremy Schmutz, None, Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres Nature. ,vol. 492, pp. 423- 427 ,(2012) , 10.1038/NATURE11798
Wei Xue, Zhengming Wang, Mingjian Du, Yidi Liu, Jin-Yuan Liu, Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells. BMC Genomics. ,vol. 14, pp. 629- 629 ,(2013) , 10.1186/1471-2164-14-629
Xueying Guan, Mingxiong Pang, Gyoungju Nah, Xiaoli Shi, Wenxue Ye, David M Stelly, Z Jeffrey Chen, None, miR828 and miR858 regulate homoeologous MYB2 gene functions in Arabidopsis trichome and cotton fibre development Nature Communications. ,vol. 5, pp. 3050- ,(2014) , 10.1038/NCOMMS4050