Adaptation of Skyline for Targeted Lipidomics.

作者: Bing Peng , Robert Ahrends

DOI: 10.1021/ACS.JPROTEOME.5B00841

关键词:

摘要: In response to the urgent need for analysis software that is capable of handling data from targeted high-throughput lipidomics experiments, we here present a systematic workflow straightforward method design and selected reaction monitoring in based on lipid building blocks. Skyline powerful primarily designed proteomics applications where it widely used. We adapted this tool “Plug Play” system research. This extension offers unique capability assemble mass spectrometry methods complex lipids easily by making use With simple yet tailored modifications, analyze main classes such as glycerophospholipids, sphingolipids, glycerolipids, cholesteryl-esters, cholesterol can be quickly introduced into easy application end users without distinct bioinformatics skills. To illustrate benefits our novel strategy, used quantify sphingolipi...

参考文章(32)
P. Roepstorff, J. Fohlman, Letter to the editors Biological Mass Spectrometry. ,vol. 11, pp. 601- 601 ,(1984) , 10.1002/BMS.1200111109
Ryo Taguchi, Mashahiro Nishijima, Takao Shimizu, Basic analytical systems for lipidomics by mass spectrometry in Japan. Methods in Enzymology. ,vol. 432, pp. 185- 211 ,(2007) , 10.1016/S0076-6879(07)32008-9
Abdul Basit, Daniele Piomelli, Andrea Armirotti, None, Rapid evaluation of 25 key sphingolipids and phosphosphingolipids in human plasma by LC-MS/MS. Analytical and Bioanalytical Chemistry. ,vol. 407, pp. 5189- 5198 ,(2015) , 10.1007/S00216-015-8585-6
Yan Wang, Aaron M. Armando, Oswald Quehenberger, Chao Yan, Edward A. Dennis, Comprehensive ultra-performance liquid chromatographic separation and mass spectrometric analysis of eicosanoid metabolites in human samples Journal of Chromatography A. ,vol. 1359, pp. 60- 69 ,(2014) , 10.1016/J.CHROMA.2014.07.006
Carly A Sherwood, Ashley Eastham, Lik Wee Lee, Jenni Risler, Hamid Mirzaei, Jayson A Falkner, Daniel B Martin, None, Rapid optimization of MRM-MS instrument parameters by subtle alteration of precursor and product m/z targets. Journal of Proteome Research. ,vol. 8, pp. 3746- 3751 ,(2009) , 10.1021/PR801122B
Ronny Herzog, Kai Schuhmann, Dominik Schwudke, Julio L. Sampaio, Stefan R. Bornstein, Michael Schroeder, Andrej Shevchenko, LipidXplorer: A Software for Consensual Cross-Platform Lipidomics PLoS ONE. ,vol. 7, pp. e29851- ,(2012) , 10.1371/JOURNAL.PONE.0029851
Venkatesh Kota, Hiroko Hama, 2′-Hydroxy ceramide in membrane homeostasis and cell signaling Advances in Biological Regulation. ,vol. 54, pp. 223- 230 ,(2014) , 10.1016/J.JBIOR.2013.09.012
Peter Husen, Kirill Tarasov, Maciej Katafiasz, Elena Sokol, Johannes Vogt, Jan Baumgart, Robert Nitsch, Kim Ekroos, Christer S. Ejsing, Analysis of Lipid Experiments (ALEX): A Software Framework for Analysis of High-Resolution Shotgun Lipidomics Data PLoS ONE. ,vol. 8, pp. e79736- ,(2013) , 10.1371/JOURNAL.PONE.0079736
Hideo Ogiso, Makoto Taniguchi, Shinichi Araya, Shinya Aoki, Lusi Wardhani, Yuka Yamashita, Yoshibumi Ueda, Toshiro Okazaki, Comparative Analysis of Biological Sphingolipids with Glycerophospholipids and Diacylglycerol by LC-MS/MS Metabolites. ,vol. 4, pp. 98- 114 ,(2014) , 10.3390/METABO4010098