Bipartite molecular approach for species delimitation and resolving cryptic speciation of Exobasidium vexans within the Exobasidium genus.
作者： Chayanika Chaliha , V Chandra Kaladhar , Robin Doley , Praveen Kumar Verma , Aditya Kumar
DOI: 10.1016/J.COMPBIOLCHEM.2021.107496
关键词:
摘要: Abstract Exobasidium vexans, a basidiomycete pathogen, is the causal organism of blister blight disease in tea. The molecular identification pathogen remains challenge due to limited availability genomic data sequence repositories and cryptic speciation within its genus Exobasidium. In this study, nuclear internal transcribed spacer rDNA region (ITS) based DNA barcode was developed for E. address problem background speciation. isolation vexans strain confirmed through morphological studies followed by utilizing ITS barcode. Phylogenetic analysis on Maximum Parsimony (MP), Likelihood (ML) Bayesian Inference (BI) as strain. Further, BI using BEAST mediated estimation divergence time evolutionary relationship process Yule diversification model wherein approximated have diverged Paleozoic era. study thus sheds light barcode-based species delimitation
sci-hub.st 参考文章(25)
C.H. Gadd, C.A. Loos, The basidiospores of Exobasidium vexans Transactions of The British Mycological Society. ,vol. 31, pp. 229- 233 ,(1948) , 10.1016/S0007-1536(48)80004-5
Hideyuki Nagao, Makoto Kakishima, Masanobu Akimoto, Kunihei Kishi, Akinori Ezuka, Exobasidium dubium and E. miyabei sp. nov. causing Exobasidium leaf blisters on Rhododendron spp. in Japan Mycoscience. ,vol. 44, pp. 1- 9 ,(2003) , 10.1007/S10267-002-0068-X
Marcin Piątek, Matthias Lutz, Patti Welton, Exobasidium darwinii, a new Hawaiian species infecting endemic Vaccinium reticulatum in Haleakala National Park Mycological Progress. ,vol. 11, pp. 361- 371 ,(2012) , 10.1007/S11557-011-0751-4
Hideyuki Nagao, Makoto Kakishima, Toyozo Sato, Three species of Exobasidium causing Exobasidium leaf blight on subgenus Hymenanthes, Rhododendron spp., in Japan Mycoscience. ,vol. 45, pp. 85- 95 ,(2004) , 10.1007/S10267-003-0162-8
Jia-Jia Chen, Bao-Kai Cui, Li-Wei Zhou, Kari Korhonen, Yu-Cheng Dai, Phylogeny, divergence time estimation, and biogeography of the genus Heterobasidion (Basidiomycota, Russulales) Fungal Diversity. ,vol. 71, pp. 185- 200 ,(2015) , 10.1007/S13225-014-0317-2
Hideyuki Nagao, Makoto Kakishima, Seiji Ogawa, Toyozo Sato, Exobasidium symploci-japonicae var. carpogenum var. nov. causing Exobasidium fruit deformation on Symplocos lucida in Japan Mycoscience. ,vol. 44, pp. 369- 375 ,(2003) , 10.1007/S10267-003-0126-Z
Hideyuki Nagao, Akinori Ezuka, Hiroto Ohkubo, Makoto Kakishima, A new species of Exobasidium causing witches' broom on Rhododendron wadanum Mycoscience. ,vol. 42, pp. 549- 554 ,(2001) , 10.1007/BF02460953
S Altschula, Warren Gisha, Webb Millerb, E Meyersc, D Lipmana, None, Basic Local Alignment Search Tool Journal of Molecular Biology. ,vol. 215, pp. 403- 410 ,(1990) , 10.1016/S0022-2836(05)80360-2
Xuli Wang, Rui Zang, Zhiyuan Yin, Zhensheng Kang, Lili Huang, Delimiting cryptic pathogen species causing apple Valsa canker with multilocus data. Ecology and Evolution. ,vol. 4, pp. 1369- 1380 ,(2014) , 10.1002/ECE3.1030
Patrícia Luz Ribeiro, Alessandro Rapini, Uiara Catharina Soares e Silva, Cássio van den Berg, Using multiple analytical methods to improve phylogenetic hypotheses in Minaria (Apocynaceae). Molecular Phylogenetics and Evolution. ,vol. 65, pp. 915- 925 ,(2012) , 10.1016/J.YMPEV.2012.08.019