Comparing thousands of circular genomes using the CGView comparison tool

作者: Jason R Grant , Adriano S Arantes , Paul Stothard

DOI: 10.1186/1471-2164-13-202

关键词:

摘要: … for comparative genomics tools that can handle large numbers of sequences. The CGView … , plasmid, chloroplast, or mitochondrial genomes to thousands of other genomes or sequence …

参考文章(9)
Laura Elnitski, Cathy Riemer, Richard Burhans, Ross Hardison, Webb Miller, MultiPipMaker: comparative alignment server for multiple DNA sequences. Current protocols in human genetics. ,vol. 30, ,(2005) , 10.1002/0471250953.BI1004S9
Nabil-Fareed Alikhan, Nicola K Petty, Nouri L Ben Zakour, Scott A Beatson, BLAST Ring Image Generator (BRIG) : simple prokaryote genome comparisons BMC Genomics. ,vol. 12, pp. 402- 402 ,(2011) , 10.1186/1471-2164-12-402
J. R. Grant, P. Stothard, The CGView Server: a comparative genomics tool for circular genomes Nucleic Acids Research. ,vol. 36, pp. 181- 184 ,(2008) , 10.1093/NAR/GKN179
Peter F. Hallin, Tim T. Binnewies, David W. Ussery, The genome BLASTatlas—a GeneWiz extension for visualization of whole-genome homology Molecular BioSystems. ,vol. 4, pp. 363- 371 ,(2008) , 10.1039/B717118H
Roman L Tatusov, Natalie D Fedorova, John D Jackson, Aviva R Jacobs, Boris Kiryutin, Eugene V Koonin, Dmitri M Krylov, Raja Mazumder, Sergei L Mekhedov, Anastasia N Nikolskaya, B Sridhar Rao, Sergei Smirnov, Alexander V Sverdlov, Sona Vasudevan, Yuri I Wolf, Jodie J Yin, Darren A Natale, The COG database: an updated version includes eukaryotes BMC Bioinformatics. ,vol. 4, pp. 41- 41 ,(2003) , 10.1186/1471-2105-4-41
T. J. Carver, K. M. Rutherford, M. Berriman, M.-A. Rajandream, B. G. Barrell, J. Parkhill, ACT: the Artemis comparison tool Bioinformatics. ,vol. 21, pp. 3422- 3423 ,(2005) , 10.1093/BIOINFORMATICS/BTI553
P. Stothard, D. S. Wishart, Circular genome visualization and exploration using CGView Bioinformatics. ,vol. 21, pp. 537- 539 ,(2005) , 10.1093/BIOINFORMATICS/BTI054
Zheng Zhang, Webb Miller, David J Lipman, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research. ,vol. 25, pp. 3389- 3402 ,(1997) , 10.1093/NAR/25.17.3389
M. Krzywinski, J. Schein, I. Birol, J. Connors, R. Gascoyne, D. Horsman, S. J. Jones, M. A. Marra, Circos: An information aesthetic for comparative genomics Genome Research. ,vol. 19, pp. 1639- 1645 ,(2009) , 10.1101/GR.092759.109