Crystal structure analysis of a fatty acid double‐bond hydratase from Lactobacillus acidophilus

作者: Anton Volkov , Sohail Khoshnevis , Piotr Neumann , Cornelia Herrfurth , Daniel Wohlwend

DOI: 10.1107/S0907444913000991

关键词:

摘要: Bacteria have evolved mechanisms for the hydrogenation of unsaturated fatty acids. Hydroxy acid formation may be first step in such a process; however, knowledge structural and mechanistic aspects this reaction is scarce. Recently, myosin cross-reactive antigen was shown to bacterial FAD-containing hydratase which acts on 9Z 12Z double bonds C16 C18 non-esterified acids, with 10-hydroxy 10,13-dihydroxy These hydratases form large protein family conserved across Gram-positive Gram-negative bacteria no sequence similarity any known apart from FAD-binding motif. In order shed light substrate recognition mechanism reaction, crystal structure Lactobacillus acidophilus (LAH) determined by single-wavelength anomalous dispersion. Crystal structures apo LAH bound linoleic were refined at resolutions 2.3 1.8 A, respectively. homodimer; each protomer consists four intricately connected domains. Three them substrate-binding sites reveal three domains several flavin-dependent enzymes, including amine oxidoreductases. The additional fourth domain located C-terminus α-helices. It covers entrance hydrophobic channel leading surface active site. presence acid, one undergoes conformational changes opens other homodimer. molecule channel, suggesting movement lid triggered recognition.

参考文章(38)
Anastassis Perrakis, Richard Morris, Victor S. Lamzin, Automated protein model building combined with iterative structure refinement. Nature Structural & Molecular Biology. ,vol. 6, pp. 458- 463 ,(1999) , 10.1038/8263
Xiaohong Qin, Lu Sun, Xin Wen, Xue Yang, Ying Tan, Hao Jin, Qiongyao Cao, Weihong Zhou, Zhen Xi, Yuequan Shen, Structural insight into unique properties of protoporphyrinogen oxidase from Bacillus subtilis. Journal of Structural Biology. ,vol. 170, pp. 76- 82 ,(2010) , 10.1016/J.JSB.2009.11.012
I.S. Nam, P.C. Garnsworthy, Biohydrogenation of linoleic acid by rumen fungi compared with rumen bacteria Journal of Applied Microbiology. ,vol. 103, pp. 551- 556 ,(2007) , 10.1111/J.1365-2672.2007.03317.X
Anton Volkov, Alena Liavonchanka, Olga Kamneva, Tomas Fiedler, Cornelia Goebel, Bernd Kreikemeyer, Ivo Feussner, Myosin Cross-reactive Antigen of Streptococcus pyogenes M49 Encodes a Fatty Acid Double Bond Hydratase That Plays a Role in Oleic Acid Detoxification and Bacterial Virulence Journal of Biological Chemistry. ,vol. 285, pp. 10353- 10361 ,(2010) , 10.1074/JBC.M109.081851
Dominique Böttcher, Uwe T Bornscheuer, Protein engineering of microbial enzymes. Current Opinion in Microbiology. ,vol. 13, pp. 274- 282 ,(2010) , 10.1016/J.MIB.2010.01.010
Orly Dym, David Eisenberg, Sequence-structure analysis of FAD-containing proteins. Protein Science. ,vol. 10, pp. 1712- 1728 ,(2001) , 10.1110/PS.12801
A. T. Brünger, Assessment of Phase Accuracy by Cross Validation: the Free R Value. Methods and Applications Acta Crystallographica Section D-biological Crystallography. ,vol. 49, pp. 24- 36 ,(1993) , 10.1107/S0907444992007352
Chang Ji Zheng, Jung-Sung Yoo, Tae-Gyu Lee, Hee-Young Cho, Young-Ho Kim, Won-Gon Kim, None, Fatty acid synthesis is a target for antibacterial activity of unsaturated fatty acids FEBS Letters. ,vol. 579, pp. 5157- 5162 ,(2005) , 10.1016/J.FEBSLET.2005.08.028
A. Liavonchanka, E. Hornung, I. Feussner, M. G. Rudolph, Structure and mechanism of the Propionibacterium acnes polyunsaturated fatty acid isomerase Proceedings of the National Academy of Sciences of the United States of America. ,vol. 103, pp. 2576- 2581 ,(2006) , 10.1073/PNAS.0510144103