Proteochemometric modeling of HIV protease susceptibility

作者: Maris Lapins , Martin Eklund , Ola Spjuth , Peteris Prusis , Jarl ES Wikberg

DOI: 10.1186/1471-2105-9-181

关键词:

摘要: Background A major obstacle in treatment of HIV is the ability virus to mutate rapidly into drug-resistant variants. A method for predicting susceptibility mutated strains antiviral agents would provide substantial clinical benefit as well facilitate development new candidate drugs. Therefore, we used proteochemometrics model protease inhibitors current use, utilizing descriptions physico-chemical properties proteases and 3D structural property inhibitors. The were correlated data 828 unique variants seven use; set comprised 4792 protease-inhibitor combinations.

参考文章(35)
Han van de Waterbeemd, Chemometric methods in molecular design VCH. ,(1995)
Jarl E. S. Wikberg, Maris Lapinsh, Peteris Prusis, Proteochemometrics: A Tool for Modeling the Molecular Interaction Space Wiley‐VCH Verlag GmbH & Co. KGaA. pp. 289- 309 ,(2005) , 10.1002/3527603948.CH10
Peteris Prusis, Staffan Uhlén, Ramona Petrovska, Maris Lapinsh, Jarl ES Wikberg, Prediction of indirect interactions in proteins BMC Bioinformatics. ,vol. 7, pp. 167- 167 ,(2006) , 10.1186/1471-2105-7-167
Eva Freyhult, Peteris Prusis, Maris Lapinsh, Jarl ES Wikberg, Vincent Moulton, Mats G Gustafsson, Unbiased descriptor and parameter selection confirms the potential of proteochemometric modelling BMC Bioinformatics. ,vol. 6, pp. 50- 50 ,(2005) , 10.1186/1471-2105-6-50
Hiroyasu Ohtaka, Arne Schön, Ernesto Freire, Multidrug resistance to HIV-1 protease inhibition requires cooperative coupling between distal mutations. Biochemistry. ,vol. 42, pp. 13659- 13666 ,(2003) , 10.1021/BI0350405
Niko Beerenwinkel, Martin Däumer, Mark Oette, Klaus Korn, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig, Hauke Walter, Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes Nucleic Acids Research. ,vol. 31, pp. 3850- 3855 ,(2003) , 10.1093/NAR/GKG575
Maris Lapinsh, Santa Veiksina, Staffan Uhlén, Ramona Petrovska, Ilze Mutule, Felikss Mutulis, Sviatlana Yahorava, Peteris Prusis, Jarl E. S. Wikberg, Proteochemometric mapping of the interaction of organic compounds with melanocortin receptor subtypes. Molecular Pharmacology. ,vol. 67, pp. 50- 59 ,(2005) , 10.1124/MOL.104.002857
Monique Nijhuis, Noortje M van Maarseveen, Stephane Lastere, Pauline Schipper, Eoin Coakley, Bärbel Glass, Mirka Rovenska, Dorien de Jong, Colombe Chappey, Irma W Goedegebuure, Gabrielle Heilek-Snyder, Dominic Dulude, Nick Cammack, Lea Brakier-Gingras, Jan Konvalinka, Neil Parkin, Hans-Georg Kräusslich, Francoise Brun-Vezinet, Charles A. B Boucher, A novel substrate-based HIV-1 protease inhibitor drug resistance mechanism. PLOS Medicine. ,vol. 4, ,(2007) , 10.1371/JOURNAL.PMED.0040036
Maria Sandberg, Lennart Eriksson, Jörgen Jonsson, Michael Sjöström, Svante Wold, New Chemical Descriptors Relevant for the Design of Biologically Active Peptides. A Multivariate Characterization of 87 Amino Acids Journal of Medicinal Chemistry. ,vol. 41, pp. 2481- 2491 ,(1998) , 10.1021/JM9700575