Optimal statistical methods for analysis of single-molecule data

作者: Lucas Paul Watkins

DOI:

关键词:

摘要: Time-resolved single molecule fluorescence measurements are important probes for the conformational dynamics of biological macromolecules. The best time resolution in such techniques will only be achieved by measuring arrival times individual photons at detector and making a detailed statistical analysis photon data. This work presents several general approaches to estimation molecular parameters based on times. In first, amount information present data set involving continuous intramolecular motion is quantified Fisher information, allowing an algorithm constructed which achieves theoretical limits distance resolution. second approach tailored discrete intensity jumps optical molecules or particles. It uses recursive generalized likelihood ratio test determine location change points directly from Third, maximum entropy taken probability density function estimation. takes advantage previously derived, avoids over-fitting produced straightforward deconvolution methods. All these methods applied measure persistence length series polyproline oligopeptides.

参考文章(104)
D. Thirumalai, J. K. Bhattacharjee, J. D. Bryngelson, Distribution Function of the End-to-End Distance of Semiflexible Polymers arXiv: Statistical Mechanics. ,(1997)
Gunnar F. Schröder, Helmut Grubmüller, Maximum likelihood trajectories from single molecule fluorescence resonance energy transfer experiments Journal of Chemical Physics. ,vol. 119, pp. 9920- 9924 ,(2003) , 10.1063/1.1616511
Brian K. Kay, Michael P. Williamson, Marius Sudol, The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains The FASEB Journal. ,vol. 14, pp. 231- 241 ,(2000) , 10.1096/FASEBJ.14.2.231
Brian G. Leroux, Consistent estimation of a mixing distribution Annals of Statistics. ,vol. 20, pp. 1350- 1360 ,(1992) , 10.1214/AOS/1176348772
C. Eggeling, J. Widengren, R. Rigler, C. A. M. Seidel, Photobleaching of Fluorescent Dyes under Conditions Used for Single-Molecule Detection: Evidence of Two-Step Photolysis. Analytical Chemistry. ,vol. 70, pp. 2651- 2659 ,(1998) , 10.1021/AC980027P
Markus Lippitz, Christian G. Hübner, Thomas Christ, Holger Eichner, Patrice Bordat, Andreas Herrmann, Klaus Müllen, Thomas Basché, Coherent electronic coupling versus localization in individual molecular dimers Physical Review Letters. ,vol. 92, pp. 103001- ,(2004) , 10.1103/PHYSREVLETT.92.103001
Benjamin C. Stevens, Taekjip Ha, Discrete and heterogeneous rotational dynamics of single membrane probe dyes in gel phase supported lipid bilayer. Journal of Chemical Physics. ,vol. 120, pp. 3030- 3039 ,(2004) , 10.1063/1.1640349
E Geva, J.L Skinner, Two-state dynamics of single biomolecules in solution Chemical Physics Letters. ,vol. 288, pp. 225- 229 ,(1998) , 10.1016/S0009-2614(98)00322-4
M. Kuno, D. P. Fromm, H. F. Hamann, A. Gallagher, D. J. Nesbitt, ``On''/``off'' fluorescence intermittency of single semiconductor quantum dots Journal of Chemical Physics. ,vol. 115, pp. 1028- 1040 ,(2001) , 10.1063/1.1377883