Virtual organelle self-coding for fluorescence imaging via adversarial learning.

作者: George Nehmetallah , Christopher B. Raub , Lin-Ching Chang , Vy Bui , Thanh Nguyen

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摘要: Significance: Our study introduces an application of deep learning to virtually generate fluorescence images to reduce the burdens of cost and time from considerable effort in …

参考文章(33)
Philipp Fischer, Thomas Brox, None, U-Net: Convolutional Networks for Biomedical Image Segmentation medical image computing and computer assisted intervention. pp. 234- 241 ,(2015) , 10.1007/978-3-319-24574-4_28
Sara Abrahamsson, Molly McQuilken, Shalin B Mehta, Amitabh Verma, Johannes Larsch, Rob Ilic, Rainer Heintzmann, Cornelia I Bargmann, Amy S Gladfelter, Rudolf Oldenbourg, None, MultiFocus Polarization Microscope (MF-PolScope) for 3D polarization imaging of up to 25 focal planes simultaneously Optics Express. ,vol. 23, pp. 7734- 7754 ,(2015) , 10.1364/OE.23.007734
Ryo Ishikawa, Eiji Okunishi, Hidetaka Sawada, Yukihito Kondo, Fumio Hosokawa, Eiji Abe, Direct imaging of hydrogen-atom columns in a crystal by annular bright-field electron microscopy Nature Materials. ,vol. 10, pp. 278- 281 ,(2011) , 10.1038/NMAT2957
Mark-Anthony Bray, Adam N. Fraser, Thomas P. Hasaka, Anne E. Carpenter, Workflow and Metrics for Image Quality Control in Large-Scale High-Content Screens Journal of Biomolecular Screening. ,vol. 17, pp. 266- 274 ,(2012) , 10.1177/1087057111420292
, Generative Adversarial Nets neural information processing systems. ,vol. 27, pp. 2672- 2680 ,(2014) , 10.3156/JSOFT.29.5_177_2
Anne E Carpenter, Thouis R Jones, Michael R Lamprecht, Colin Clarke, In Kang, Ola Friman, David A Guertin, Joo Chang, Robert A Lindquist, Jason Moffat, Polina Golland, David M Sabatini, CellProfiler: image analysis software for identifying and quantifying cell phenotypes Genome Biology. ,vol. 7, pp. 1- 11 ,(2006) , 10.1186/GB-2006-7-10-R100
Jennifer Lippincott-Schwartz, Erik Snapp, Anne Kenworthy, Studying protein dynamics in living cells. Nature Reviews Molecular Cell Biology. ,vol. 2, pp. 444- 456 ,(2001) , 10.1038/35073068
Sara Abrahamsson, Jiji Chen, Bassam Hajj, Sjoerd Stallinga, Alexander Y Katsov, Jan Wisniewski, Gaku Mizuguchi, Pierre Soule, Florian Mueller, Claire Dugast Darzacq, Xavier Darzacq, Carl Wu, Cornelia I Bargmann, David A Agard, Maxime Dahan, Mats G L Gustafsson, Fast multicolor 3D imaging using aberration-corrected multifocus microscopy Nature Methods. ,vol. 10, pp. 60- 63 ,(2013) , 10.1038/NMETH.2277
P. Sarder, A. Nehorai, Deconvolution methods for 3-D fluorescence microscopy images IEEE Signal Processing Magazine. ,vol. 23, pp. 32- 45 ,(2006) , 10.1109/MSP.2006.1628876
Shantanu Singh, Xiaoyun Wu, Vebjorn Ljosa, Mark-Anthony Bray, Federica Piccioni, David E. Root, John G. Doench, Jesse S. Boehm, Anne E. Carpenter, Morphological Profiles of RNAi-Induced Gene Knockdown Are Highly Reproducible but Dominated by Seed Effects PLOS ONE. ,vol. 10, pp. e0131370- ,(2015) , 10.1371/JOURNAL.PONE.0131370