Immuno-epidemiological Modeling of HIV-1 Predicts High Heritability of the Set-Point Virus Load, while Selection for CTL Escape Dominates Virulence Evolution

作者: Christiaan H. van Dorp , Michiel van Boven , Rob J. de Boer

DOI: 10.1371/JOURNAL.PCBI.1003899

关键词:

摘要: It has been suggested that HIV-1 evolved its set-point virus load to be optimized for transmission. Previous epidemiological models and studies into the heritability of confirm this mode adaptation within human population is feasible. However, during many cycles replication between infection a host transmission next host, under selection escape from immune responses, not Here we investigate with computational mathematical how these two levels selection, within-host between-host, are intertwined. We find when rate comparable what observed in patients, hosts dominant over Surprisingly, do high values heritability, argue estimates can caused by ‘footprints’ left differing hosts' systems on virus.

参考文章(77)
Charles Calef, Brian Foley, Bette Korber, Marcus Daniels, Thomas Leitner, HIV-1 Subtype and Circulating Recombinant Form (CRF) Reference Sequences, 2005 ,(2005)
J. R. Norris, Markov Chains Cambridge University Press. ,(1997) , 10.1017/CBO9780511810633
Odo Diekmann, Tom Britton, Hans Heesterbeek, Mathematical Tools for Understanding Infectious Disease Dynamics ,(2012)
Katrina A. Lythgoe, Lorenzo Pellis, Christophe Fraser, IS HIV SHORT‐SIGHTED? INSIGHTS FROM A MULTISTRAIN NESTED MODEL Evolution. ,vol. 67, pp. 2769- 2782 ,(2013) , 10.1111/EVO.12166
Yves Rosseel, lavaan: AnRPackage for Structural Equation Modeling Journal of Statistical Software. ,vol. 48, pp. 1- 36 ,(2012) , 10.18637/JSS.V048.I02
Alasdair Leslie, Philippa C. Matthews, Jennifer Listgarten, Jonathan M. Carlson, Carl Kadie, Thumbi Ndung'u, Christian Brander, Hoosen Coovadia, Bruce D. Walker, David Heckerman, Philip J. R. Goulder, Additive Contribution of HLA Class I Alleles in the Immune Control of HIV-1 Infection Journal of Virology. ,vol. 84, pp. 9879- 9888 ,(2010) , 10.1128/JVI.00320-10
Ulrich D. Kadolsky, Becca Asquith, Quantifying the Impact of Human Immunodeficiency Virus-1 Escape From Cytotoxic T-Lymphocytes PLoS Computational Biology. ,vol. 6, pp. e1000981- 11 ,(2010) , 10.1371/JOURNAL.PCBI.1000981
Roland R. Regoes, Rustom Antia, David A. Garber, Guido Silvestri, Mark B. Feinberg, Silvija I. Staprans, Roles of Target Cells and Virus-Specific Cellular Immunity in Primary Simian Immunodeficiency Virus Infection Journal of Virology. ,vol. 78, pp. 4866- 4875 ,(2004) , 10.1128/JVI.78.9.4866-4875.2004
George Shirreff, Lorenzo Pellis, Oliver Laeyendecker, Christophe Fraser, Transmission Selects for HIV-1 Strains of Intermediate Virulence: A Modelling Approach PLoS Computational Biology. ,vol. 7, pp. e1002185- ,(2011) , 10.1371/JOURNAL.PCBI.1002185
Tao Dong, Yonghong Zhang, Ke Yi Xu, Huiping Yan, Ian James, Yanchun Peng, Marie-Eve Blais, Silvana Gaudieri, Xinyue Chen, Wenhui Lun, Hao Wu, Wen Yan Qu, Tim Rostron, Ning Li, Yu Mao, Simon Mallal, Xiaoning Xu, Andrew McMichael, Mina John, Sarah L. Rowland-Jones, Extensive HLA-driven viral diversity following a narrow-source HIV-1 outbreak in rural China Blood. ,vol. 118, pp. 98- 106 ,(2011) , 10.1182/BLOOD-2010-06-291963