A Bayesian approach to reconstructing genetic regulatory networks with hidden factors

作者: Matthew J Beal , Francesco Falciani , Zoubin Ghahramani , Claudia Rangel , David L Wild

DOI: 10.1093/BIOINFORMATICS/BTI014

关键词:

摘要: … In this article, we demonstrate how variational Bayesian methods can be used to approximate the posterior quantities required for Bayesian learning in SSMs of gene expression time …

参考文章(32)
Patrick Y. C. Hwang, Robert Grover Brown, introduction to random signals and applied kalman filtering John Wiley and Sons. ,(1992)
Probabilistic Modeling in Bioinformatics and Medical Informatics Probabilistic Modeling in Bioinformatics and Medical Informatics 1st. pp. 508- 508 ,(2010) , 10.1007/B138794
JM Bernardo, MJ Bayarri, JO Berger, AP Dawid, D Heckerman, AFM Smith, M West, The variational Bayesian EM algorithm for incomplete data: with application to scoring graphical model structures Oxford University Press. ,(2003)
Claudia Rangel, John Angus, Zoubin Ghahramani, David L. Wild, Modeling Genetic Regulatory Networks using Gene Expression Profiling and State-Space Models Advanced Information and Knowledge Processing. pp. 269- 293 ,(2005) , 10.1007/1-84628-119-9_9
R. H. Shumway, D. S. Stoffer, AN APPROACH TO TIME SERIES SMOOTHING AND FORECASTING USING THE EM ALGORITHM Journal of Time Series Analysis. ,vol. 3, pp. 253- 264 ,(1982) , 10.1111/J.1467-9892.1982.TB00349.X
F. X. WU, W. J. ZHANG, A. J. KUSALIK, Modeling gene expression from microarray expression data with state-space equations. pacific symposium on biocomputing. pp. 581- 592 ,(2003) , 10.1142/9789812704856_0054
Nitzan Rosenfeld, Uri Alon, Response Delays and the Structure of Transcription Networks Journal of Molecular Biology. ,vol. 329, pp. 645- 654 ,(2003) , 10.1016/S0022-2836(03)00506-0
Peter Angel, Michael Karin, The role of Jun, Fos and the AP-1 complex in cell-proliferation and transformation Biochimica et Biophysica Acta (BBA) - Reviews on Cancer. ,vol. 1072, pp. 129- 157 ,(1991) , 10.1016/0304-419X(91)90011-9
P. D'HAESELEER, X. WEN, S. FUHRMAN, R. SOMOGYI, Linear modeling of mRNA expression levels during CNS development and injury. pacific symposium on biocomputing. pp. 41- 52 ,(1998) , 10.1142/9789814447300_0005