Fumigation with dazomet modifies soil microbiota in apple orchards affected by replant disease

作者: Lidia Nicola , Elena Turco , Davide Albanese , Claudio Donati , Martin Thalheimer

DOI: 10.1016/J.APSOIL.2017.02.002

关键词:

摘要: Abstract Apple replant disease (ARD) is a disorder that affects apple trees when they are replanted in soil where the same species was previously grown. ARD has been known for long time, but precise cause not yet identified. Although most probably due to combination of abiotic and biotic factors, fact fumigation commonly prevents symptoms, at least temporarily, supports hypothesis microorganisms play an important role it. In order find possible relations between taxa composition microbial communities plant growth ARD-affected orchards, we compared fumigated (dazomet 99%) untreated soils by using next-generation sequencing (NGS) technologies. Soil sampling carried out difference plots became significant terms shoot fruit yield specifically end second growing season. Total DNA extracted two target regions (ITS fungi 16S rDNA bacteria), were pyrosequenced with Roche’s 454 Platform. Both bacterial fungal differed significantly our study. Bacillus sp. (ρ = 0.64), Streptomyces Pseudomonas (ρ = 0.59), Chaetomium (ρ = 0.85) some positively correlated asymptomatic trees. cause-effect relation cannot be proven, results confirm that, dazomet reduces also modifies length, particular increasing presence beneficial their action against pathogens.

参考文章(59)
S. Mocali, S. Landi, G. Curto, E. Dallavalle, A. Infantino, C. Colzi, G. d’Errico, P.F. Roversi, L. D’Avino, L. Lazzeri, Resilience of soil microbial and nematode communities after biofumigant treatment with defatted seed meals Industrial Crops and Products. ,vol. 75, pp. 79- 90 ,(2015) , 10.1016/J.INDCROP.2015.04.031
Ingrid H. Franke-Whittle, Luisa M. Manici, Heribert Insam, Blaz Stres, Rhizosphere bacteria and fungi associated with plant growth in soils of three replanted apple orchards Plant and Soil. ,vol. 395, pp. 317- 333 ,(2015) , 10.1007/S11104-015-2562-X
Louise Feld, Mathis Hjort Hjelmsø, Morten Schostag Nielsen, Anne Dorthe Jacobsen, Regin Rønn, Flemming Ekelund, Paul Henning Krogh, Bjarne Westergaard Strobel, Carsten Suhr Jacobsen, Pesticide Side Effects in an Agricultural Soil Ecosystem as Measured by amoA Expression Quantification and Bacterial Diversity Changes PLOS ONE. ,vol. 10, pp. e0126080- ,(2015) , 10.1371/JOURNAL.PONE.0126080
Mark Mazzola, Manipulation of rhizosphere bacterial communities to induce suppressive soils. Journal of Nematology. ,vol. 39, pp. 213- 220 ,(2007)
Linda L. Kinkel, Daniel C. Schlatter, Matthew G. Bakker, Brett E. Arenz, Streptomyces competition and co-evolution in relation to plant disease suppression Research in Microbiology. ,vol. 163, pp. 490- 499 ,(2012) , 10.1016/J.RESMIC.2012.07.005
Pascal Lienhard, Sébastien Terrat, Nicolas Chemidlin Prévost-Bouré, Virginie Nowak, Tiffanie Régnier, Sengphanh Sayphoummie, Khamkéo Panyasiri, Florent Tivet, Olivier Mathieu, Jean Levêque, Pierre-Alain Maron, Lionel Ranjard, None, Pyrosequencing evidences the impact of cropping on soil bacterial and fungal diversity in Laos tropical grassland Agronomy for Sustainable Development. ,vol. 34, pp. 525- 533 ,(2014) , 10.1007/S13593-013-0162-9
Yared Tesfai Tewoldemedhin, Mark Mazzola, Wilhelm J. Botha, Christoffel F. J. Spies, Adéle McLeod, Characterization of fungi (Fusarium and Rhizoctonia) and oomycetes (Phytophthora and Pythium) associated with apple orchards in South Africa European Journal of Plant Pathology. ,vol. 130, pp. 215- 229 ,(2011) , 10.1007/S10658-011-9747-9
T. Z. DeSantis, P. Hugenholtz, N. Larsen, M. Rojas, E. L. Brodie, K. Keller, T. Huber, D. Dalevi, P. Hu, G. L. Andersen, Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB Applied and Environmental Microbiology. ,vol. 72, pp. 5069- 5072 ,(2006) , 10.1128/AEM.03006-05