Understanding narwhal diving behaviour using Hidden Markov Models with dependent state distributions and long range dependence

作者: Manh Cuong Ngôe , Mads Peter Heide-Jørgensen , Susanne Ditlevsen

DOI: 10.1101/388835

关键词:

摘要: Diving behaviour of narwhals is still largely unknown. We build three-state Hidden Markov models (HMM) to describe the diving a narwhal and fit three-dimensional response vector maximum dive depth, duration dives post-dive surface time 8,609 measured in East Greenland over 83 days, an extraordinarily long rich data set. In particular, diurnal patterns for marine mammal being inferred, by using periodic B-splines with boundary knots 0 24 hours. Several HMMs covariates are used characterize patterns. Narwhal have not been analysed like this before, but studies other whale species, variables assumed independent. extend existing allow dependence between state distributions, show that has impact on conclusions drawn about behaviour. It thus paramount relax strong biologically unrealistic assumption obtain trustworthy inferences.

参考文章(18)
M.P. Heide-Jørgensen, Narwhal: Monodon monoceros Encyclopedia of Marine Mammals (Second Edition). pp. 754- 758 ,(2009) , 10.1016/B978-0-12-373553-9.00177-2
Randall R. Reeves, Peter J. Ewins, Selina Agbayani, Mads Peter Heide-Jørgensen, Kit M. Kovacs, Christian Lydersen, Robert Suydam, Wendy Elliott, Gert Polet, Yvette van Dijk, Rosanne Blijleven, Distribution of endemic cetaceans in relation to hydrocarbon development and commercial shipping in a warming Arctic Marine Policy. ,vol. 44, pp. 375- 389 ,(2014) , 10.1016/J.MARPOL.2013.10.005
Roland Langrock, Tiago A. Marques, Robin W. Baird, Len Thomas, Modeling the Diving Behavior of Whales: A Latent-Variable Approach with Feedback and Semi-Markovian Components Journal of Agricultural Biological and Environmental Statistics. ,vol. 19, pp. 82- 100 ,(2014) , 10.1007/S13253-013-0158-6
K. L. Laidre, M. P. Heide-Jorgensen, WINTER FEEDING INTENSITY OF NARWHALS (MONODON MONOCEROS) Marine Mammal Science. ,vol. 21, pp. 45- 57 ,(2005) , 10.1111/J.1748-7692.2005.TB01207.X
Roland Langrock, Ruth King, Jason Matthiopoulos, Len Thomas, Daniel Fortin, Juan M. Morales, Flexible and practical modeling of animal telemetry data: hidden Markov models and extensions Ecology. ,vol. 93, pp. 2336- 2342 ,(2012) , 10.1890/11-2241.1
Katharine Mullen, David Ardia, David Gil, Donald Windover, James Cline, DEoptim: An R Package for Global Optimization by Differential Evolution Journal of Statistical Software. ,vol. 40, pp. 1- 26 ,(2011) , 10.18637/JSS.V040.I06
Stacy L. DeRuiter, Brandon L. Southall, John Calambokidis, Walter M. X. Zimmer, Dinara Sadykova, Erin A. Falcone, Ari S. Friedlaender, John E. Joseph, David Moretti, Gregory S. Schorr, Len Thomas, Peter L. Tyack, First direct measurements of behavioural responses by Cuvier's beaked whales to mid-frequency active sonar Biology Letters. ,vol. 9, pp. 20130223- 20130223 ,(2013) , 10.1098/RSBL.2013.0223
Natacha Aguilar Soto, Mark P Johnson, Peter T Madsen, Francisca Díaz, Iván Domínguez, Alberto Brito, Peter Tyack, None, Cheetahs of the deep sea: deep foraging sprints in short-finned pilot whales off Tenerife (Canary Islands) Journal of Animal Ecology. ,vol. 77, pp. 936- 947 ,(2008) , 10.1111/J.1365-2656.2008.01393.X
Mads Heide-Jørgensen, Nynne H Nielsen, Rikke G Hansen, Susanna B Blackwell, Stomach temperature of narwhals (Monodon monoceros) during feeding events Animal Biotelemetry. ,vol. 2, pp. 9- ,(2014) , 10.1186/2050-3385-2-9
G.D. Forney, The viterbi algorithm Proceedings of the IEEE. ,vol. 61, pp. 268- 278 ,(1973) , 10.1109/PROC.1973.9030