Diversity, metabolism and cultivation of archaea in mangrove ecosystems

作者: Cui-Jing Zhang , Yu-Lian Chen , Yi-Hua Sun , Jie Pan , Ming-Wei Cai

DOI: 10.1007/S42995-020-00081-9

关键词:

摘要: Mangroves comprise a globally significant intertidal ecosystem that contains high diversity of microorganisms, including fungi, bacteria and archaea. Archaea is major domain life plays important roles in biogeochemical cycles these ecosystems. In this review, the potential archaea mangroves are briefly highlighted. Then, metabolism archaeal community mangrove ecosystems across world summarized Bathyarchaeota, Euryarchaeota, Thaumarchaeota, Woesearchaeota, Lokiarchaeota confirmed as most abundant ubiquitous groups. The metabolic groups indicates their ecological function carbon, nitrogen sulfur cycling. Finally, some cultivation strategies could be applied to uncultivated lineages from wetlands suggested, refinements traditional methods based on genomic transcriptomic information, numerous innovative techniques such single-cell isolation high-throughput culturing (HTC). These provide more opportunities obtain previously uncultured

参考文章(103)
L. Daniels, R. Natarajan, B. S. Rajagopal, R. Mohanraju, Isolation and characterization of a methanogenic bacterium from mangrove sediments THE JOURNAL OF MARINE BIOTECHNOLOGY. ,vol. 5, pp. 147- 152 ,(1997)
Jean-Louis Garcia, Bernard Ollivier, William B. Whitman, The Order Methanomicrobiales Springer New York. pp. 208- 230 ,(2006) , 10.1007/0-387-30743-5_10
Aharon Oren, The Order Halobacteriales Springer New York. pp. 113- 164 ,(2006) , 10.1007/0-387-30743-5_8
Costanzo Bertoldo, Garabed Antranikian, The Order Thermococcales Springer New York. pp. 69- 81 ,(2006) , 10.1007/0-387-30743-5_5
Adam S. Bonin, David R. Boone, The Order Methanobacteriales ,(2006)
Christopher J. Rivard, J. Michael Henson, Michael V. Thomas, Paul H. Smith, Isolation and Characterization of Methanomicrobium paynteri sp. nov., a Mesophilic Methanogen Isolated from Marine Sediments † Applied and Environmental Microbiology. ,vol. 46, pp. 484- 490 ,(1983) , 10.1128/AEM.46.2.484-490.1983
Anish Bhattacharyya, Niladri Shekhar Majumder, Pijush Basak, Shayantan Mukherji, Debojyoti Roy, Sudip Nag, Anwesha Haldar, Dhrubajyoti Chattopadhyay, Suparna Mitra, Maitree Bhattacharyya, Abhrajyoti Ghosh, Diversity and Distribution of Archaea in the Mangrove Sediment of Sundarbans. Archaea. ,vol. 2015, pp. 968582- 968582 ,(2015) , 10.1155/2015/968582
Karthik Anantharaman, John A Breier, Gregory J Dick, None, Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center The ISME Journal. ,vol. 10, pp. 225- 239 ,(2016) , 10.1038/ISMEJ.2015.81
J.-C. Lagier, F. Armougom, M. Million, P. Hugon, I. Pagnier, C. Robert, F. Bittar, G. Fournous, G. Gimenez, M. Maraninchi, J.-F. Trape, E.V. Koonin, B. La Scola, D. Raoult, Microbial culturomics: paradigm shift in the human gut microbiome study Clinical Microbiology and Infection. ,vol. 18, pp. 1185- 1193 ,(2012) , 10.1111/1469-0691.12023
R. Devereux, J. J. Mosher, T. A. Vishnivetskaya, S. D. Brown, D. L. Beddick, D. F. Yates, A. V. Palumbo, Changes in northern Gulf of Mexico sediment bacterial and archaeal communities exposed to hypoxia. Geobiology. ,vol. 13, pp. 478- 493 ,(2015) , 10.1111/GBI.12142