The refined crystal structure of ribonuclease A at 2.0 A resolution.

作者: A. Wlodawer , R. Bott , L. Sjölin

DOI: 10.1016/S0021-9258(19)68195-0

关键词:

摘要: This paper describes the structure of bovine pancreatic ribonuclease A, refined by a restrained parameter least squares procedure at 2.0 A resolution, and rebuilt using computer graphics. The final agreement factor (formula see text) is 0.159. positions 951 main chain atoms have been determined with an estimated accuracy 0.17 A. In addition, model includes phosphate group in active site 176 waters, many them partial occupancy. bond lengths RNase differ from ideal values overall root mean square deviation 0.022 A; corresponding value for angle distances 0.06 planar ideality 0.017 peptide torsion angles 180 degrees 3.4 degrees. good difference Fourier maps. Two histidines, His 12 119, form hydrogen bonds to ion. 119 also bonded carboxyl ASp 121 carbonyl Thr 45. very similar that S, particularly region. discrepancy all residues 1 16 24 123 1.06 region 0.6

参考文章(20)
H.W. Wyckoff, D. Tsernoglou, A.W. Hanson, J.R. Knox, B. Lee, Frederic M. Richards, The Three-Dimensional Structure of Ribonuclease-S INTERPRETATION OF AN ELECTRON DENSITY MAP AT A NOMINAL RESOLUTION OF 2 A Journal of Biological Chemistry. ,vol. 245, pp. 305- 328 ,(1970) , 10.1016/S0021-9258(18)63395-2
C.C.F. Blake, M.J. Geisow, S.J. Oatley, B. Rérat, C. Rérat, Structure of prealbumin: secondary, tertiary and quaternary interactions determined by Fourier refinement at 1.8 A. Journal of Molecular Biology. ,vol. 121, pp. 339- 356 ,(1977) , 10.1016/0022-2836(78)90368-6
G. KARTHA, J. BELLO, D. HARKER, Tertiary Structure of Ribonuclease Nature. ,vol. 213, pp. 862- 865 ,(1967) , 10.1038/213862A0
A.R. Sielecki, W.A. Hendrickson, C.G. Broughton, L.T.J. Delbaere, G.D. Brayer, M.N.G. James, Protein structure refinement: Streptomyces griseus serine protease A at 1.8 A resolution. Journal of Molecular Biology. ,vol. 134, pp. 781- 804 ,(1979) , 10.1016/0022-2836(79)90486-8
Simon E.V. Phillips, Structure and refinement of oxymyoglobin at 1·6 Å resolution Journal of Molecular Biology. ,vol. 142, pp. 531- 554 ,(1980) , 10.1016/0022-2836(80)90262-4
Wolfgang Steigemann, Ernst Weber, Structure of erythrocruorin in different ligand states refined at 1.4 A resolution. Journal of Molecular Biology. ,vol. 127, pp. 309- 338 ,(1979) , 10.1016/0022-2836(79)90332-2
E.N. Baker, Structure of actinidin, after refinement at 1.7 Å resolution Journal of Molecular Biology. ,vol. 141, pp. 441- 484 ,(1980) , 10.1016/0022-2836(80)90255-7
A. Wlodawer, L. Sjolin, Orientation of histidine residues in RNase A: neutron diffraction study Proceedings of the National Academy of Sciences of the United States of America. ,vol. 78, pp. 2853- 2855 ,(1981) , 10.1073/PNAS.78.5.2853