Temporal and Spatial Clustering of Bacterial Genotypes
作者： Blanca Gallego
DOI: 10.1007/978-1-4419-1327-2_18
关键词:
摘要: Genotypic characterization of bacterial isolates provides valuable information for epidemiological surveillance and microbial population biology. In particular, the ability to discern clonal relatedness among can be used identify links sites transmission, some which are not easily traced using conventional contact investigation. The spatial temporal clustering that share same or closely related genotypes add further value use molecular fingerprinting in detection management infectious disease outbreaks. This chapter reviews discusses both spatio-temporal public health biosurveillance includes examples allow integration genotyping into decision making.
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sci-hub.st 参考文章(49)
Jack T. Crawford, Christopher R. Braden, Barbara A. Schable, Ida M. Onorato, National Tuberculosis Genotyping and Surveillance Network: design and methods. Emerging Infectious Diseases. ,vol. 8, pp. 1192- 1196 ,(2002) , 10.3201/EID0811.020296
Timothy J. Ward, For capillary electrophoresis Analytical Chemistry. ,vol. 66, pp. 632A- 640A ,(1994) , 10.1021/AC00083A001
S. W. Roberts, Control chart tests based on geometric moving averages Technometrics. ,vol. 42, pp. 97- 101 ,(2000) , 10.2307/1271439
Christian Sonesson, A CUSUM framework for detection of space-time disease clusters using scan statistics. Statistics in Medicine. ,vol. 26, pp. 4770- 4789 ,(2007) , 10.1002/SIM.2898
RICHARD F. POTTHOFF, MAURICE WHITTINGHILL, Testing for homogeneity: II. The Poisson distribution Biometrika. ,vol. 53, pp. 183- 190 ,(1966) , 10.1093/BIOMET/53.1-2.183
Blanca Gallego, Vitali Sintchenko, Qinning Wang, Lester Hiley, Gwendolyn L. Gilbert, Enrico Coiera, Biosurveillance of emerging biothreats using scalable genotype clustering Journal of Biomedical Informatics. ,vol. 42, pp. 66- 73 ,(2009) , 10.1016/J.JBI.2008.07.002
Christian Sonesson, David Bock, A review and discussion of prospective statistical surveillance in public health Journal of the Royal Statistical Society: Series A (Statistics in Society). ,vol. 166, pp. 5- 21 ,(2003) , 10.1111/1467-985X.00256
Bjørn-Arne Lindstedt, Traute Vardund, Lena Aas, Georg Kapperud, Multiple-locus variable-number tandem-repeats analysis of Salmonella enterica subsp. enterica serovar Typhimurium using PCR multiplexing and multicolor capillary electrophoresis. Journal of Microbiological Methods. ,vol. 59, pp. 163- 172 ,(2004) , 10.1016/J.MIMET.2004.06.014
Daniel B. Neill, Andrew W. Moore, Rapid detection of significant spatial clusters knowledge discovery and data mining. pp. 256- 265 ,(2004) , 10.1145/1014052.1014082
Douglas M. Hawkins, David H. Olwell, Cumulative Sum Charts and Charting for Quality Improvement ,(1998)