Direct Bisulfite Sequencing and Methylation Specific PCR to Detect Methylation of p15INK4b and F7 genes in Coronary Artery Disease Patients

作者: R. Mirfakhraie , A. Movafagh , A. Sayad , K. Amini , M. Yari

DOI: 10.22059/JSCIENCES.2016.56005

关键词:

摘要: Genome-Wide Association Studies (GWAS) have identified genetic variants contributing to the risk of cardiovascular disease (CVD) at chromosome 9p21 locus. The is an important susceptibility locus for several multifactorial diseases like ischemic stroke, aortic aneurysm, type 2 diabetes mellitus and coronary artery (CAD). F7 gene because its role in activating extrinsic pathway by exposure tissue factor after plaque disruption related atherothrombosis. aim present study was evaluate methylation status two CAD genes, p15INK4b F7, Iranian patients with Thirty samples from 15 male female diagnosed 3 vessels 60 Samples non-CAD controls who underwent angiography analyzed MSP direct sequencing. DNA levels increased significantly comparison control group (p-value<0.001). To quantitative analysis methylation, bisulfite sequencing method revealed 6 methylated CpGs islands. No significant difference promoter observed between group. Based on findings this it possible assume, associated pathophysiology CAD.

参考文章(22)
Peter M. Warnecke, Paul C. Vincent, Marianne Frommer, Susan J. Clark, Clare Stirzaker, Douglas S. Millar, Cheryl L. Paul, Janet Harrison, Extensive DNA Methylation Spanning the Rb Promoter in Retinoblastoma Tumors Cancer Research. ,vol. 57, pp. 2229- 2237 ,(1997)
Rudolf Jaenisch, Adrian Bird, Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals Nature Genetics. ,vol. 33, pp. 245- 254 ,(2003) , 10.1038/NG1089
Lesca M. Holdt, Steve Hoffmann, Kristina Sass, David Langenberger, Markus Scholz, Knut Krohn, Knut Finstermeier, Anika Stahringer, Wolfgang Wilfert, Frank Beutner, Stephan Gielen, Gerhard Schuler, Gabor Gäbel, Hendrik Bergert, Ingo Bechmann, Peter F. Stadler, Joachim Thiery, Daniel Teupser, Alu Elements in ANRIL Non-Coding RNA at Chromosome 9p21 Modulate Atherogenic Cell Functions through Trans-Regulation of Gene Networks PLoS Genetics. ,vol. 9, pp. e1003588- ,(2013) , 10.1371/JOURNAL.PGEN.1003588
Robert Roberts, David R. Cox, David A. Hinds, Len A. Pennacchio, Anne Tybjaerg-Hansen, Aaron R. Folsom, Eric Boerwinklle, Helen H. Hobbs, Jonathan C. Cohen, Ruth McPherson, Alexander Pertsemlidis, Nihan Kavaslar, Alexandre Stewart, A common allele on chromosome 9 associated with coronary heart disease Obstetrical & Gynecological Survey. ,vol. 62, pp. 584- 585 ,(2007) , 10.1097/01.OGX.0000279314.45442.BB
Bruce Furie, Barbara C. Furie, Mechanisms of Thrombus Formation The New England Journal of Medicine. ,vol. 359, pp. 938- 949 ,(2008) , 10.1056/NEJMRA0801082
J. G. Herman, J. R. Graff, S. Myohanen, B. D. Nelkin, S. B. Baylin, Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands Proceedings of the National Academy of Sciences of the United States of America. ,vol. 93, pp. 9821- 9826 ,(1996) , 10.1073/PNAS.93.18.9821
Jei Kim, Jee Yeon Kim, Kyu Sang Song, Young Ho Lee, Joong Seok Seo, Jaroslav Jelinek, Pascal J. Goldschmidt-Clermont, Jean-Pierre J. Issa, Epigenetic changes in estrogen receptor β gene in atherosclerotic cardiovascular tissues and in-vitro vascular senescence Biochimica et Biophysica Acta. ,vol. 1772, pp. 72- 80 ,(2007) , 10.1016/J.BBADIS.2006.10.004
Y Kotake, T Nakagawa, K Kitagawa, S Suzuki, N Liu, M Kitagawa, Y Xiong, Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15 INK4B tumor suppressor gene Oncogene. ,vol. 30, pp. 1956- 1962 ,(2011) , 10.1038/ONC.2010.568
Michael S. Cunnington, Mauro Santibanez Koref, Bongani M. Mayosi, John Burn, Bernard Keavney, Chromosome 9p21 SNPs Associated with Multiple Disease Phenotypes Correlate with ANRIL Expression PLoS Genetics. ,vol. 6, pp. e1000899- ,(2010) , 10.1371/JOURNAL.PGEN.1000899
A. Helgadottir, G. Thorleifsson, A. Manolescu, S. Gretarsdottir, T. Blondal, A. Jonasdottir, A. Jonasdottir, A. Sigurdsson, A. Baker, A. Palsson, G. Masson, D. F. Gudbjartsson, K. P. Magnusson, K. Andersen, A. I. Levey, V. M. Backman, S. Matthiasdottir, T. Jonsdottir, S. Palsson, H. Einarsdottir, S. Gunnarsdottir, A. Gylfason, V. Vaccarino, W. C. Hooper, M. P. Reilly, C. B. Granger, H. Austin, D. J. Rader, S. H. Shah, A. A. Quyyumi, J. R. Gulcher, G. Thorgeirsson, U. Thorsteinsdottir, A. Kong, K. Stefansson, A Common Variant on Chromosome 9p21 Affects the Risk of Myocardial Infarction Science. ,vol. 316, pp. 1491- 1493 ,(2007) , 10.1126/SCIENCE.1142842