Hypervariations of a protease-encoding gene, PD0218 (pspB), in Xylella fastidiosa strains causing almond leaf scorch and Pierce's disease in California.
作者： J. Chen , E. Civerolo , K. Tubajika , S. Livingston , B. Higbee
DOI: 10.1128/AEM.02386-07
关键词:
摘要: Xylella fastidiosa is a gram-negative plant pathogenic bacterium that causes almond leaf scorch disease (ALSD) and Pierce's (PD) of grape in many regions North America Mexico. Of the two 16S rRNA gene genotypes described California, A genotype strains cause ALSD only G both PD ALSD. While different diseases, little known about their genetic variation. In this study, we identified putative protease locus, PD0218 (pspB), genome X. evaluated variation at locus populations. contains tandem repeats ACDCCA, translated to threonine proline (TP), upstream conserved domain. Among 116 isolated from seven locations repeat numbers (TRNs) varied 9 47, with total 30 TRN genotypes, indicating possesses an active mechanism for contracting expanding locus. Significant was found among (mean = 29.9), which could be further divided into groups: PD-Gsmall 17.3) PD-Glarge 44.3). Less 21.7). The even smaller after were subdivided 13.3, genotype; mean 27.1, genotype). Genetic potentially useful sensitive discrimination strains. However, stability, range, correlation phenotypes should epidemiological applications such as pathotype identification delineation pathogen origin.
sci-hub.se 参考文章(32)
Steve Rozen, Helen Skaletsky, Primer3 on the WWW for general users and for biologist programmers. Methods of Molecular Biology. ,vol. 132, pp. 365- 386 ,(2000) , 10.1385/1-59259-192-2:365
Andrew John George Simpson, Fernando de Castro Reinach, Pea Arruda, FA d Abreu, Marcio Acencio, Renato Alvarenga, LM Carareto Alves, Jorge Enrique Araya, Gilson Soares Baia, CS Baptista, MH Barros, ED Bonaccorsi, S Bordin, JM Bove, MRS Briones, MRP Bueno, AA Camargo, LEA Camargo, DM Carraro, H Carrer, NB Colauto, C Colombo, FF Costa, MCR Costa, CM Costa-Neto, LL Coutinho, M Cristofani, E Dias-Neto, C Docena, H El-Dorry, AP Facincani, AJS Ferreira, VCA Ferreira, JA Ferro, JS Fraga, SC Franca, MC Franco, M Frohme, LR Furlan, M Garnier, GH Goldman, MHS Goldman, SL Gomes, A Gruber, PL Ho, JD Hoheisel, ML Junqueira, EL Kemper, JP Kitajima, JE Krieger, EE Kuramae, F Laigret, MR Lambais, LCC Leite, EGM Lemos, MVF Lemos, SA Lopes, CR Lopes, JA Machado, MA Machado, AMBN Madeira, HMF Madeira, CL Marino, MV Marques, EAL Martins, EMF Martins, AY Matsukuma, CFM Menck, EC Miracca, CY Miyaki, CB Monteiro-Vitorello, DH Moon, MA Nagai, ALTO Nascimento, LES Netto, A Nhani Jr, FG Nobrega, LR Nunes, MA Oliveira, MC De Oliveira, RC De Oliveira, DA Palmieri, A Paris, BR Peixoto, GAG Pereira, HA Pereira Jr, JB Pesquero, RB Quaggio, PG Roberto, V Rodrigues, AJ De M. Rosa, VE de Rosa Jr, RG De Sá, RV Santelli, HE Sawasaki, ACR Da Silva, AM Da Silva, FR Da Silva, WA Silva, JF Da Silveira, MLZ Silvestri, WJ Siqueira, AA De Souza, AP De Souza, MF Terenzi, D Truffi, SM Tsai, MH Tsuhako, H Vallada, MA Van Sluys, S Verjovski-Almeida, AL Vettore, MA Zago, M Zatz, J Meidanis, JC Setubal, None, The genome sequence of the plant pathogen Xylella fastidiosa Nature. ,vol. 406, pp. 151- 157 ,(2000) , 10.1038/35018003
M. Bichara, J. Wagner, I.B. Lambert, Mechanisms of tandem repeat instability in bacteria Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis. ,vol. 598, pp. 144- 163 ,(2006) , 10.1016/J.MRFMMM.2006.01.020
J. M. Wells, B. C. Raju, H.-Y. Hung, W. G. Weisburg, L. Mandelco-Paul, D. J. Brenner, Xylella fastidiosa gen. nov., sp. nov.: Gram-negative, xylem-limited, fastidious plant bacteria related to Xanthomonas spp. International Journal of Systematic and Evolutionary Microbiology. ,vol. 37, pp. 136- 143 ,(1987) , 10.1099/00207713-37-2-136
Luiza Amaral de Castro, Thiago Rodrigues Pedroso, Suzana Satomi Kuchiishi, Marni Ramenzoni, Jalusa Deon Kich, Arnaldo Zaha, Marilene Henning Vainstein, Henrique Bunselmeyer Ferreira, Variable number of tandem aminoacid repeats in adhesion-related CDS products in Mycoplasma hyopneumoniae strains Veterinary Microbiology. ,vol. 116, pp. 258- 269 ,(2006) , 10.1016/J.VETMIC.2006.04.022
Luciana Maria Fedatto, Maria Estela Silva-Stenico, Augusto Etchegaray, Flávia TH Pacheco, Jorge LM Rodrigues, Siu Mui Tsai, None, Detection and characterization of protease secreted by the plant pathogen Xylella fastidiosa Microbiological Research. ,vol. 161, pp. 263- 272 ,(2006) , 10.1016/J.MICRES.2005.10.001
Srecko M. Mircetich, Etiology of Almond Leaf Scorch Disease and Transmission of the Causal Agent Phytopathology. ,vol. 66, pp. 17- 24 ,(1976) , 10.1094/PHYTO-66-17
Mavis Hendson, Alexander H. Purcell, Deqiao Chen, Chris Smart, Magalie Guilhabert, Bruce Kirkpatrick, Genetic diversity of Pierce's disease strains and other pathotypes of Xylella fastidiosa Applied and Environmental Microbiology. ,vol. 67, pp. 895- 903 ,(2001) , 10.1128/AEM.67.2.895-903.2001
Micheline Strand, Tomas A. Prolla, R. Michael Liskay, Thomas D. Petes, Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair Nature. ,vol. 365, pp. 274- 276 ,(1993) , 10.1038/365274A0
Alex van Belkum, The role of short sequence repeats in epidemiologic typing. Current Opinion in Microbiology. ,vol. 2, pp. 306- 311 ,(1999) , 10.1016/S1369-5274(99)80053-8