Plant mRNA decay: extended roles and potential determinants.
作者： Bosheng Li , Huihui Wu , Hongwei Guo
DOI: 10.1016/J.PBI.2018.08.007
关键词:
摘要: The decay of mRNA in plants is tightly controlled and shapes the transcriptome. roles this process are to digest RNA as well suppress exogenous endogenous gene silencing by preventing siRNA generation. Recent evidence suggests that also regulates accumulation putative 3' fragment-derived long non-coding RNAs (3'lncRNAs). generation or 3'lncRNA from a selective subset mRNAs raises fundamental question how machineries select determine their substrate transcripts for distinctive destiny. Evidence potential determinants, such codon bias, GC content N6-methyladenosine (m6A) modification, rapidly emerging. This paper aims review recent discoveries plant decay.
cabdirect.org
sci-hub.se 参考文章(48)
Jun Xu, Jun-Yi Yang, Qi-Wen Niu, Nam-Hai Chua, Arabidopsis DCP2, DCP1, and VARICOSE Form a Decapping Complex Required for Postembryonic Development The Plant Cell. ,vol. 18, pp. 3386- 3398 ,(2007) , 10.1105/TPC.106.047605
Yukako Chiba, Pamela J. Green, mRNA Degradation Machinery in Plants Journal of Plant Biology. ,vol. 52, pp. 114- 124 ,(2009) , 10.1007/S12374-009-9021-2
Tim R. Mercer, Dagmar Wilhelm, Marcel E. Dinger, Giulia Soldà, Darren J. Korbie, Evgeny A. Glazov, Vy Truong, Maren Schwenke, Cas Simons, Klaus I. Matthaei, Robert Saint, Peter Koopman, John S. Mattick, Expression of distinct RNAs from 3′ untranslated regions Nucleic Acids Research. ,vol. 39, pp. 2393- 2403 ,(2011) , 10.1093/NAR/GKQ1158
Evelina Angov, Codon usage: Nature's roadmap to expression and folding of proteins Biotechnology Journal. ,vol. 6, pp. 650- 659 ,(2011) , 10.1002/BIOT.201000332
G. Olmedo, H. Guo, B. D. Gregory, S. D. Nourizadeh, L. Aguilar-Henonin, H. Li, F. An, P. Guzman, J. R. Ecker, ETHYLENE-INSENSITIVE5 encodes a 5′→3′ exoribonuclease required for regulation of the EIN3-targeting F-box proteins EBF1/2 Proceedings of the National Academy of Sciences of the United States of America. ,vol. 103, pp. 13286- 13293 ,(2006) , 10.1073/PNAS.0605528103
Vladimir Presnyak, Najwa Alhusaini, Ying-Hsin Chen, Sophie Martin, Nathan Morris, Nicholas Kline, Sara Olson, David Weinberg, Kristian E. Baker, Brenton R. Graveley, Jeff Coller, Codon Optimality Is a Major Determinant of mRNA Stability Cell. ,vol. 160, pp. 1111- 1124 ,(2015) , 10.1016/J.CELL.2015.02.029
L. K. Thomas, D. B. Dix, R. C. Thompson, Codon choice and gene expression: synonymous codons differ in their ability to direct aminoacylated-transfer RNA binding to ribosomes in vitro Proceedings of the National Academy of Sciences of the United States of America. ,vol. 85, pp. 4242- 4246 ,(1988) , 10.1073/PNAS.85.12.4242
Mengji Cao, Peng Du, Xianbing Wang, Yun-Qi Yu, Yan-Hong Qiu, Wanxiang Li, Amit Gal-On, Changyong Zhou, Yi Li, Shou-Wei Ding, Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America. ,vol. 111, pp. 14613- 14618 ,(2014) , 10.1073/PNAS.1407131111
Xinyan Zhang, Ying Zhu, Xiaodan Liu, Xinyu Hong, Yang Xu, Ping Zhu, Yang Shen, Huihui Wu, Yusi Ji, Xing Wen, Chen Zhang, Qiong Zhao, Yichuan Wang, Jian Lu, Hongwei Guo, None, Suppression of endogenous gene silencing by bidirectional cytoplasmic RNA decay in Arabidopsis Science. ,vol. 348, pp. 120- 123 ,(2015) , 10.1126/SCIENCE.AAA2618
E. L. van Dijk, C. L. Chen, Y. d’Aubenton-Carafa, S. Gourvennec, M. Kwapisz, V. Roche, C. Bertrand, M. Silvain, P. Legoix-Né, S. Loeillet, A. Nicolas, C. Thermes, A. Morillon, XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast Nature. ,vol. 475, pp. 114- 117 ,(2011) , 10.1038/NATURE10118