`Affinity proteomics to study endogenous protein complexes: Pointers, pitfalls, preferences and perspectives

作者: John LaCava , Kelly R. Molloy , Martin S. Taylor , Michal Domanski , Brian T. Chait

DOI: 10.2144/000114262

关键词:

摘要: Dissecting and studying cellular systems requires the ability to specifically isolate distinct proteins along with co-assembled constituents of their associated complexes. Affinity capture techniques leverage high affinity, specificity reagents target interest from cell extracts. coupled mass spectrometry (MS)-based proteomic analyses has enabled isolation characterization a wide range endogenous protein Here, we outline effective procedures for affinity complexes, highlighting best practices common pitfalls.

参考文章(165)
Ana Cecília A Roque, Christopher R Lowe, Affinity chromatography: history, perspectives, limitations and prospects Methods of Molecular Biology. ,vol. 421, pp. 1- 21 ,(2008)
K D Speicher, D W Speicher, S Harper, O Kolbas, Systematic analysis of peptide recoveries from in-gel digestions for protein identifications in proteome studies Journal of biomolecular techniques. ,vol. 11, pp. 74- 86 ,(2000)
Oriana Salazar, Bacteria and Yeast Cell Disruption Using Lytic Enzymes Methods of Molecular Biology. ,vol. 424, pp. 23- 34 ,(2008) , 10.1007/978-1-60327-064-9_2
Stanley Goldberg, Mechanical/physical methods of cell disruption and tissue homogenization. Methods of Molecular Biology. ,vol. 2261, pp. 1- 20 ,(2008) , 10.1007/978-1-4939-2550-6_1
Marjeta Urh, Dan Simpson, Kate Zhao, Affinity chromatography: general methods. Methods in Enzymology. ,vol. 463, pp. 417- 438 ,(2009) , 10.1016/S0076-6879(09)63026-3
Daniela S Gerhard, L Wagner, EA Feingold, CM Shenmen, LH Grouse, G Schuler, SL Klein, S Old, R Rasooly, P Good, M Guyer, AM Peck, JG Derge, D Lipman, FS Collins, W Jang, S Sherry, M Feolo, L Misquitta, E Lee, K Rotmistrovsky, SF Greenhut, CF Schaefer, K Buetow, TI Bonner, D Haussler, J Kent, M Kiekhaus, T Furey, M Brent, C Prange, K Schreiber, N Shapiro, NK Bhat, RF Hopkins, F Hsie, T Driscoll, MB Soares, TL Casavant, TE Scheetz, Brown-stein MJ, TB Usdin, S Toshiyuki, P Carninci, Y Piao, DB Dudekula, MS Ko, K Kawakami, Y Suzuki, S Sugano, CE Gruber, MR Smith, B Simmons, T Moore, R Waterman, SL Johnson, Y Ruan, CL Wei, S Mathavan, PH Gunaratne, J Wu, AM Garcia, SW Hulyk, E Fuh, Y Yuan, A Sneed, C Kowis, A Hodgson, DM Muzny, J McPherson, RA Gibbs, J Fahey, E Helton, M Ketteman, A Madan, S Rodrigues, A Sanchez, M Whiting, A Madari, AC Young, KD Wetherby, SJ Granite, PN Kwong, CP Brinkley, RL Pearson, GG Bouffard, RW Blakesly, ED Green, MC Dickson, AC Rodriguez, J Grimwood, J Schmutz, RM Myers, YS Butterfield, M Griffith, OL Griffith, MI Krzywinski, N Liao, R Morin, R Morrin, D Palmquist, AS Petrescu, U Skalska, DE Smailus, JM Stott, A Schnerch, JE Schein, SJ Jones, RA Holt, A Baross, MA Marra, S Clifton, KA Makowski, S Bosak, J Malek, The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC) Genome Research. ,vol. 14, pp. 2121- 2127 ,(2004) , 10.1101/GR.2596504
Sameh Magdeldin, Affinity Chromatography: Principles and Applications Affinity Chromatography. ,(2012) , 10.5772/39087
Ron Hernan, Ken Heuermann, Bill Brizzard, Multiple epitope tagging of expressed proteins for enhanced detection. BioTechniques. ,vol. 28, pp. 789- 793 ,(2000) , 10.2144/00284PF01
John LaCava, Nagarajan Chandramouli, Hua Jiang, Michael P. Rout, Improved native isolation of endogenous Protein A-tagged protein complexes. BioTechniques. ,vol. 54, pp. 213- 216 ,(2013) , 10.2144/000114012