Tautomers and topomers: challenging the uncertainties of direct physicochemical modeling

作者: Richard D. Cramer

DOI: 10.1007/S10822-010-9330-Z

关键词:

摘要: To address the goal of improved discovery decision making, uncertainties physicochemical modeling, as exemplified by tautomer identification, are contrasted with methods focused exclusively on sole experimental system variable, changes in ligand structures, topomers.

参考文章(25)
Roderick E. Hubbard, Structure-based drug discovery : an overview RSC Publishing. ,(2006)
Alan Grossfield, Daniel M. Zuckerman, Chapter 2 Quantifying Uncertainty and Sampling Quality in Biomolecular Simulations Annual Reports in Computational Chemistry. ,vol. 5, pp. 23- 48 ,(2009) , 10.1016/S1574-1400(09)00502-7
Richard D Cramer, Robert J Jilek, Katherine M Andrews, Dbtop: topomer similarity searching of conventional structure databases. Journal of Molecular Graphics & Modelling. ,vol. 20, pp. 447- 462 ,(2002) , 10.1016/S1093-3263(01)00146-2
Richard D. Cramer, George Redl, Charles E. Berkoff, Substructural analysis. A novel approach to the problem of drug design. Journal of Medicinal Chemistry. ,vol. 17, pp. 533- 535 ,(1974) , 10.1021/JM00251A014
Richard D. Cramer, Michael A. Poss, Mark A. Hermsmeier, Thomas J. Caulfield, Mark C. Kowala, Maria T. Valentine, Prospective Identification of Biologically Active Structures by Topomer Shape Similarity Searching Journal of Medicinal Chemistry. ,vol. 42, pp. 3919- 3933 ,(1999) , 10.1021/JM990159Q
Richard D. Cramer, Robert D. Clark, David E. Patterson, Allan M. Ferguson, Bioisosterism as a molecular diversity descriptor: steric fields of single "topomeric" conformers. Journal of Medicinal Chemistry. ,vol. 39, pp. 3060- 3069 ,(1996) , 10.1021/JM960291F
Robert D. Brown, Yvonne C. Martin, Use of Structure−Activity Data To Compare Structure-Based Clustering Methods and Descriptors for Use in Compound Selection Journal of Chemical Information and Computer Sciences. ,vol. 36, pp. 572- 584 ,(1996) , 10.1021/CI9501047
Valeria Amendola, Massimo Boiocchi, Luigi Fabbrizzi, Arianna Palchetti, What anions do inside a receptor's cavity: a trifurcate anion receptor providing both electrostatic and hydrogen-bonding interactions. Chemistry: A European Journal. ,vol. 11, pp. 5648- 5660 ,(2005) , 10.1002/CHEM.200500351
Gary Tresadern, Daniele Bemporad, Trevor Howe, A comparison of ligand based virtual screening methods and application to corticotropin releasing factor 1 receptor Journal of Molecular Graphics and Modelling. ,vol. 27, pp. 860- 870 ,(2009) , 10.1016/J.JMGM.2009.01.003