High throughput single-cell genome sequencing gives insights into the generation andevolution of mosaic aneuploidy in Leishmania donovani

作者: Yvon Sterkers , Nada Kuk , Jean-Claude Dujardin , Jean-Claude Dujardin , Hideo Imamura

DOI: 10.1101/2021.05.11.443577

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摘要: Leishmania, a unicellular eukaryotic parasite, is unique model for aneuploidy and cellular heterogeneity, along with their potential role in adaptation to environmental stresses. Somy variation within clonal populations was previously explored small subset of chromosomes using fluorescence hybridization methods. This phenomenon, termed mosaic (MA), might have important evolutionary functional implications but remains under-explored due technological limitations. Here, we applied validated high throughput single-cell genome sequencing method study the first time extent dynamics whole karyotype heterogeneity two Leishmania representing different stages MA evolution vitro. We found that drastic changes karyotypes quickly emerge population stemming from an almost euploid founder cell. possibly involves polyploidization/hybridization at early stage expansion, followed by assorted ploidy reduction. During further increases moderate gradual karyotypic alterations. usually affected defined chromosomes, which some display enrichment snoRNA genes could represent adaptative benefit amplification these chromosomes. Our data provide complete characterization pave way studies.

参考文章(55)
Pauline C. Ng, Ewen F. Kirkness, Whole Genome Sequencing Methods in Molecular Biology. ,vol. 628, pp. 215- 226 ,(2010) , 10.1007/978-1-60327-367-1_12
Víctor Seco-Hidalgo, Antonio Osuna, Luis Miguel De Pablos, To bet or not to bet: deciphering cell to cell variation in protozoan infections Trends in Parasitology. ,vol. 31, pp. 350- 356 ,(2015) , 10.1016/J.PT.2015.05.004
Yvon Sterkers, Laurence Lachaud, Lucien Crobu, Patrick Bastien, Michel Pagès, FISH analysis reveals aneuploidy and continual generation of chromosomal mosaicism in Leishmania major Cellular Microbiology. ,vol. 13, pp. 274- 283 ,(2011) , 10.1111/J.1462-5822.2010.01534.X
Tatiana Benaglia, Didier Chauveau, David R. Hunter, Derek Young, mixtools: An R Package for Analyzing Finite Mixture Models Journal of Statistical Software. ,vol. 32, pp. 1- 29 ,(2009) , 10.18637/JSS.V032.I06
Wahid Mulla, Jin Zhu, Rong Li, Yeast: a simple model system to study complex phenomena of aneuploidy. Fems Microbiology Reviews. ,vol. 38, pp. 201- 212 ,(2014) , 10.1111/1574-6976.12048
Laurence Lachaud, Nathalie Bourgeois, Nada Kuk, Christelle Morelle, Lucien Crobu, Gilles Merlin, Patrick Bastien, Michel Pagès, Yvon Sterkers, Constitutive mosaic aneuploidy is a unique genetic feature widespread in the Leishmania genus Microbes and Infection. ,vol. 16, pp. 61- 66 ,(2014) , 10.1016/J.MICINF.2013.09.005
Audrey Romano, Ehud Inbar, Alain Debrabant, Melanie Charmoy, Phillip Lawyer, Flavia Ribeiro-Gomes, Mourad Barhoumi, Michael Grigg, Jahangheer Shaik, Deborah Dobson, Stephen M. Beverley, David L. Sacks, Cross-species genetic exchange between visceral and cutaneous strains of Leishmania in the sand fly vector Proceedings of the National Academy of Sciences of the United States of America. ,vol. 111, pp. 16808- 16813 ,(2014) , 10.1073/PNAS.1415109111
An Mannaert, Tim Downing, Hideo Imamura, Jean-Claude Dujardin, Adaptive mechanisms in pathogens: universal aneuploidy in Leishmania Trends in Parasitology. ,vol. 28, pp. 370- 376 ,(2012) , 10.1016/J.PT.2012.06.003
Andrew J. Holland, Don W. Cleveland, Boveri revisited: chromosomal instability, aneuploidy and tumorigenesis Nature Reviews Molecular Cell Biology. ,vol. 10, pp. 478- 487 ,(2009) , 10.1038/NRM2718
Anna Selmecki, Anja Forche, Judith Berman, Aneuploidy and isochromosome formation in drug-resistant Candida albicans Science. ,vol. 313, pp. 367- 370 ,(2006) , 10.1126/SCIENCE.1128242