The mechanism of transactivation regulation due to polymorphic short tandem repeats (STRs) using IGF1 promoter as a model

作者: Holly Y. Chen , Suk Ling Ma , Wei Huang , Lindan Ji , Vincent H. K. Leung

DOI: 10.1038/SREP38225

关键词:

摘要: Functional short tandem repeats (STR) are polymorphic in the population, and number of regulates expression nearby genes (known as STR, eSTR). STR IGF1 promoter has been extensively studied for its association with concentration blood various clinical traits represents an important eSTR. We previously used in-vitro luciferase reporter model to examine interaction between STRs SNPs promoter. Here, we further explored mechanism how gene transcription. An inverse correlation extent transactivation was found a haplotype consisting three (C-STR-T-T). showed that these adjacent located outside were required function The C allele rs35767 provides binding site CCAAT/enhancer-binding-protein δ (C/EBPD), which is essential gradational property eSTR FOXA3 may also be involved. Therefore, propose by caused one or more transcriptional complexes rather than direct repeat motif STR.

参考文章(45)
Sterling M. Sawaya, Andrew T. Bagshaw, Emmanuel Buschiazzo, Neil J. Gemmell, Promoter Microsatellites as Modulators of Human Gene Expression Advances in Experimental Medicine and Biology. ,vol. 769, pp. 41- 54 ,(2012) , 10.1007/978-1-4614-5434-2_4
Anja K. Mayer, Mario Muehmer, Jörg Mages, Katja Gueinzius, Christian Hess, Klaus Heeg, Robert Bals, Roland Lang, Alexander H. Dalpke, Differential recognition of TLR-dependent microbial ligands in human bronchial epithelial cells. Journal of Immunology. ,vol. 178, pp. 3134- 3142 ,(2007) , 10.4049/JIMMUNOL.178.5.3134
Rulla M Tamimi, David G Cox, Peter Kraft, Michael N Pollak, Christopher A Haiman, Iona Cheng, Matthew L Freedman, Susan E Hankinson, David J Hunter, Graham A Colditz, Common genetic variation in IGF1, IGFBP-1, and IGFBP-3 in relation to mammographic density: a cross-sectional study Breast Cancer Research. ,vol. 9, pp. 1- 13 ,(2007) , 10.1186/BCR1655
Tugce Bilgin Sonay, Tiago Carvalho, Mark D. Robinson, Maja P. Greminger, Michael Krützen, David Comas, Gareth Highnam, David Mittelman, Andrew Sharp, Tomàs Marques-Bonet, Andreas Wagner, Tandem repeat variation in human and great ape populations and its impact on gene expression divergence Genome Research. ,vol. 25, pp. 1591- 1599 ,(2015) , 10.1101/GR.190868.115
K DeLellis, S Ingles, L Kolonel, R McKean-Cowdin, B Henderson, F Stanczyk, N M Probst-Hensch, IGF1 genotype, mean plasma level and breast cancer risk in the Hawaii/Los Angeles multiethnic cohort British Journal of Cancer. ,vol. 88, pp. 277- 282 ,(2003) , 10.1038/SJ.BJC.6600728
Sterling Sawaya, Andrew Bagshaw, Emmanuel Buschiazzo, Pankaj Kumar, Shantanu Chowdhury, Michael A. Black, Neil Gemmell, Microsatellite Tandem Repeats Are Abundant in Human Promoters and Are Associated with Regulatory Elements PLoS ONE. ,vol. 8, pp. e54710- ,(2013) , 10.1371/JOURNAL.PONE.0054710
J. L. Hartley, DNA Cloning Using In Vitro Site-Specific Recombination Genome Research. ,vol. 10, pp. 1788- 1795 ,(2000) , 10.1101/GR.143000
Katherine A Bolton, Jason P Ross, Desma M Grice, Nikola A Bowden, Elizabeth G Holliday, Kelly A Avery-Kiejda, Rodney J Scott, STaRRRT: a table of short tandem repeats in regulatory regions of the human genome BMC Genomics. ,vol. 14, pp. 795- 795 ,(2013) , 10.1186/1471-2164-14-795
Satyanarayana Eleswarapu, Xiaomei Ge, Ying Wang, Jie Yu, Honglin Jiang, Growth Hormone-Activated STAT5 May Indirectly Stimulate IGF-I Gene Transcription through HNF-3γ Molecular Endocrinology. ,vol. 23, pp. 2026- 2037 ,(2009) , 10.1210/ME.2009-0178
B. S. Weir, C. Clark Cockerham, ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE Evolution. ,vol. 38, pp. 1358- 1370 ,(1984) , 10.1111/J.1558-5646.1984.TB05657.X