G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

Peter V Kharchenko, Lev Silberstein, David T Scadden, Bayesian approach to single-cell differential expression analysis Nature Methods. ,vol. 11, pp. 740- 742 ,(2014) , 10.1038/NMETH.2967

Miodrag Gužvić, Bernhard Braun, Roman Ganzer, Maximilian Burger, Michael Nerlich, Sebastian Winkler, Melanie Werner-Klein, Zbigniew T. Czyż, Bernhard Polzer, Christoph A. Klein, Combined Genome and Transcriptome Analysis of Single Disseminated Cancer Cells from Bone Marrow of Prostate Cancer Patients Reveals Unexpected Transcriptomes Cancer Research. ,vol. 74, pp. 7383- 7394 ,(2014) , 10.1158/0008-5472.CAN-14-0934

Robert Piskol, Gokul Ramaswami, Jin Billy Li, Reliable Identification of Genomic Variants from RNA-Seq Data American Journal of Human Genetics. ,vol. 93, pp. 641- 651 ,(2013) , 10.1016/J.AJHG.2013.08.008

Christoph A. Klein, Stefan Seidl, Karina Petat-Dutter, Sonja Offner, Jochen B. Geigl, Oleg Schmidt-Kittler, Nicole Wendler, Bernward Passlick, Rudolf M. Huber, Günter Schlimok, Patrick A. Baeuerle, Gert Riethmüller, Combined transcriptome and genome analysis of single micrometastatic cells Nature Biotechnology. ,vol. 20, pp. 387- 392 ,(2002) , 10.1038/NBT0402-387

Liying Yan, Mingyu Yang, Hongshan Guo, Lu Yang, Jun Wu, Rong Li, Ping Liu, Ying Lian, Xiaoying Zheng, Jie Yan, Jin Huang, Ming Li, Xinglong Wu, Lu Wen, Kaiqin Lao, Ruiqiang Li, Jie Qiao, Fuchou Tang, Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells Nature Structural & Molecular Biology. ,vol. 20, pp. 1131- 1139 ,(2013) , 10.1038/NSMB.2660

Xun Xu, Yong Hou, Xuyang Yin, Li Bao, Aifa Tang, Luting Song, Fuqiang Li, Shirley Tsang, Kui Wu, Hanjie Wu, Weiming He, Liang Zeng, Manjie Xing, Renhua Wu, Hui Jiang, Xiao Liu, Dandan Cao, Guangwu Guo, Xueda Hu, Yaoting Gui, Zesong Li, Wenyue Xie, Xiaojuan Sun, Min Shi, Zhiming Cai, Bin Wang, Meiming Zhong, Jingxiang Li, Zuhong Lu, Ning Gu, Xiuqing Zhang, Laurie Goodman, Lars Bolund, Jian Wang, Huanming Yang, Karsten Kristiansen, Michael Dean, Yingrui Li, Jun Wang, None, Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor Cell. ,vol. 148, pp. 886- 895 ,(2012) , 10.1016/J.CELL.2012.02.025

Siddharth S Dey, Lennart Kester, Bastiaan Spanjaard, Magda Bienko, Alexander van Oudenaarden, Integrated genome and transcriptome sequencing of the same cell Nature Biotechnology. ,vol. 33, pp. 285- 289 ,(2015) , 10.1038/NBT.3129

Simone Picelli, Åsa K Björklund, Omid R Faridani, Sven Sagasser, Gösta Winberg, Rickard Sandberg, Smart-seq2 for sensitive full-length transcriptome profiling in single cells Nature Methods. ,vol. 10, pp. 1096- 1098 ,(2013) , 10.1038/NMETH.2639

Yichen Shi, Peter Kirwan, James Smith, Hugh P C Robinson, Frederick J Livesey, Human cerebral cortex development from pluripotent stem cells to functional excitatory synapses Nature Neuroscience. ,vol. 15, pp. 477- 486 ,(2012) , 10.1038/NN.3041

Andrew McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark G. F. Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk, Marina Pacheco, Marco A. Marra, Martin Hirst, Torsten O. Nielsen, S. Cenk Sahinalp, David Huntsman, Sohrab P. Shah, deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data PLoS Computational Biology. ,vol. 7, pp. e1001138- ,(2011) , 10.1371/JOURNAL.PCBI.1001138