Orthology, paralogy and proposed classification for paralog subtypes
作者： Erik L.L Sonnhammer , Eugene V Koonin
DOI: 10.1016/S0168-9525(02)02793-2
关键词:
摘要: The paper clears up confusions about the concepts of orthology and paralogy, particularly in cases involving gene family expansions. terms ‘inparalog’ ‘outparalog’ are defined to distinguish ancient paralogs from lineage-specific ones.
elsevier.com
sci-hub.se 参考文章(12)
Walter M. Fitch, Homology: a personal view on some of the problems Trends in Genetics. ,vol. 16, pp. 227- 231 ,(2000) , 10.1016/S0168-9525(00)02005-9
John A Gerlt, Patricia C Babbitt, Can sequence determine function Genome Biology. ,vol. 1, pp. 1- 10 ,(2000) , 10.1186/GB-2000-1-5-REVIEWS0005
Carme Fàbrega, Mark A. Farrow, Biswarup Mukhopadhyay, Valérie de Crécy-Lagard, Angel R. Ortiz, Paul Schimmel, An aminoacyl tRNA synthetase whose sequence fits into neither of the two known classes Nature. ,vol. 411, pp. 110- 114 ,(2001) , 10.1038/35075121
Eugene V Koonin, An apology for orthologs - or brave new memes. Genome Biology. ,vol. 2, pp. 1- 2 ,(2001) , 10.1186/GB-2001-2-4-COMMENT1005
Roy A Jensen, Orthologs and paralogs - we need to get it right Genome Biology. ,vol. 2, pp. 1- 3 ,(2001) , 10.1186/GB-2001-2-8-INTERACTIONS1002
Tao Xie, Dafu Ding, Investigating 42 candidate orthologous protein groups by molecular evolutionary analysis on genome scale Gene. ,vol. 261, pp. 305- 310 ,(2000) , 10.1016/S0378-1119(00)00506-0
Olivier Lespinet, Yuri I Wolf, Eugene V Koonin, L Aravind, The role of lineage-specific gene family expansion in the evolution of eukaryotes. Genome Research. ,vol. 12, pp. 1048- 1059 ,(2002) , 10.1101/GR.174302
Yuri I. Wolf, Eugene V. Koonin, I. King Jordan, John L. Spouge, Kira S. Makarova, Lineage-Specific Gene Expansions in Bacterial and Archaeal Genomes Genome Research. ,vol. 11, pp. 555- 565 ,(2001) , 10.1101/GR.166001
Walter M. Fitch, Distinguishing Homologous From Analogous Proteins Systematic Biology. ,vol. 19, pp. 99- 113 ,(1970) , 10.2307/2412448
Maido Remm, Christian E.V. Storm, Erik L.L. Sonnhammer, Automatic clustering of orthologs and in-paralogs from pairwise species comparisons Journal of Molecular Biology. ,vol. 314, pp. 1041- 1052 ,(2001) , 10.1006/JMBI.2000.5197