Short-insert libraries as a method of problem solving in genome sequencing.

作者: Amanda A. McMurray , John E. Sulston , Michael A. Quail

DOI: 10.1101/GR.8.5.562

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摘要: As the Human Genome Project moves into its sequencing phase, a serious problem has arisen. The same been increasingly vexing in closing phase of Caenorhabditis elegans project. difficulty lies efficiently through certain regions which templates (DNA substrates for process) form complex folded secondary structures that are inaccessible to enzymes. solution, however, is simply break them up. Specifically, offending fragments sonicated heavily and recloned, as much smaller fragments, pUC vector. sequences obtained from resulting library can subsequently be assembled, free effects structure, produce high-quality, complete sequence. Because success simplicity this procedure, we have begun use it all standard primer walking at difficult.

参考文章(10)
Scott E Devine, Stephanie L Chissoe, Yolanda Eby, Richard K Wilson, Jef D Boeke, None, A transposon-based strategy for sequencing repetitive DNA in eukaryotic genomes. Genome Research. ,vol. 7, pp. 551- 563 ,(1997) , 10.1101/GR.7.5.551
F. Sanger, A.R. Coulson, T. Friedmann, G.M. Air, B.G. Barrell, N.L. Brown, J.C. Fiddes, C.A. Hutchison, P.M. Slocombe, M. Smith, The nucleotide sequence of bacteriophage φX174 Journal of Molecular Biology. ,vol. 125, pp. 225- 246 ,(1978) , 10.1016/0022-2836(78)90346-7
W. M. Barnes, PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates Proceedings of the National Academy of Sciences of the United States of America. ,vol. 91, pp. 2216- 2220 ,(1994) , 10.1073/PNAS.91.6.2216
J. Sulston, Z. Du, K. Thomas, R. Wilson, L. Hillier, R. Staden, N. Halloran, P. Green, J. Thierry-Mieg, L. Qiu, S. Dear, A. Coulson, M. Craxton, R. Durbin, M. Berks, M. Metzstein, T. Hawkins, R. Ainscough, R. Waterston, The C. elegans genome sequencing project: a beginning Nature. ,vol. 356, pp. 37- 41 ,(1992) , 10.1038/356037A0
R.P. Alderton, J. Kitau, S. Beck, Automated DNA hybridization Analytical Biochemistry. ,vol. 218, pp. 98- 102 ,(1994) , 10.1006/ABIO.1994.1146
Jonathan Kint, Matthew Sims, Kevin Clark, Rodger Staden, Karen Thomas, An Oligo-Screening Strategy to Fill Gaps Found During Shotgun Sequencing Projects Dna Sequence. ,vol. 8, pp. 241- 245 ,(1998) , 10.3109/10425179809008458
Tom Maniatis, Joseph Sambrook, E. F. Fritsch, Molecular Cloning: A Laboratory Manual ,(2001)