Investigating extradomiciliary transmission of tuberculosis: An exploratory approach using social network patterns of TB cases and controls and the genotyping of Mycobacterium tuberculosis.

作者: Suani T.R. Pinho , Susan M. Pereira , José G.V. Miranda , Tonya A. Duarte , Joilda S. Nery

DOI: 10.1016/J.TUBE.2020.102010

关键词:

摘要: Abstract Extradomiciliary contacts have been overlooked in the study of TB transmission due to difficulties identifying actual large populations. Complex network analysis provides a framework model structure contacts, specially extradomiciliary ones. We conducted incident sputum-positive cases and healthy controls occurring moderate burden city. Cases were interviewed obtain data regarding usual locations residence, work, study, leisure. Mycobacterium tuberculosis isolated from sputum was genotyped. The collected used build networks based on putative social interactions indicating possible transmission. A user-friendly open source environment (GraphTube) setup extract information data. Networks likelihood patient-patient, patient-healthy, healthy-healthy setup, depending constraint geographical distance places attended by volunteers. Using threshold for 300 m, differences between are revealed. Several clusters formed nodes with high genotypic similarity characterized. developed provided consistent results can be support targeted search potentially infected individuals help understand

参考文章(23)
Stacey Gabriel, Liuda Ziaugra, Diana Tabbaa, SNP Genotyping Using the Sequenom MassARRAY iPLEX Platform Current protocols in human genetics. ,vol. 60, ,(2009) , 10.1002/0471142905.HG0212S60
H. B. Mann, D. R. Whitney, On a Test of Whether one of Two Random Variables is Stochastically Larger than the Other Annals of Mathematical Statistics. ,vol. 18, pp. 50- 60 ,(1947) , 10.1214/AOMS/1177730491
Joao S Lopes, Isabel Marques, Patricia Soares, Hanna Nebenzahl-Guimaraes, Joao Costa, Anabela Miranda, Raquel Duarte, Adriana Alves, Rita Macedo, Tonya A Duarte, Theolis Barbosa, Martha Oliveira, Joilda S Nery, Neio Boechat, Susan M Pereira, Mauricio L Barreto, Jose Pereira-Leal, Maria Gabriela Miranda Gomes, Carlos Penha-Goncalves, None, SNP typing reveals similarity in Mycobacterium tuberculosis genetic diversity between Portugal and Northeast Brazil. Infection, Genetics and Evolution. ,vol. 18, pp. 238- 246 ,(2013) , 10.1016/J.MEEGID.2013.04.028
Flávia P.C. Sacchi, Renata M. Praça, Mariana B. Tatara, Vera Simonsen, Lucilaine Ferrazoli, Mariana G. Croda, Philip N. Suffys, Albert I. Ko, Jason R. Andrews, Julio Croda, Prisons as reservoir for community transmission of tuberculosis, Brazil Emerging Infectious Diseases. ,vol. 21, pp. 452- 455 ,(2015) , 10.3201/EID2103.140896
Roberto F.S. Andrade, José G.V. Miranda, Suani T.R. Pinho, Thierry Petit Lobão, Measuring distances between complex networks Physics Letters A. ,vol. 372, pp. 5265- 5269 ,(2008) , 10.1016/J.PHYSLETA.2008.06.044
Roberto F. S. Andrade, Ivan C. Rocha-Neto, Leonardo B. L. Santos, Charles N. de Santana, Marcelo V. C. Diniz, Thierry Petit Lobão, Aristóteles Goés-Neto, Suani T. R. Pinho, Charbel N. El-Hani, Detecting Network Communities: An Application to Phylogenetic Analysis PLoS Computational Biology. ,vol. 7, pp. e1001131- ,(2011) , 10.1371/JOURNAL.PCBI.1001131
Roberto F. S. Andrade, José G. V. Miranda, Thierry Petit Lobão, Neighborhood properties of complex networks. Physical Review E. ,vol. 73, pp. 046101- ,(2006) , 10.1103/PHYSREVE.73.046101
Afshin Yaganehdoost, Edward A. Graviss, Michael W. Ross, Gerald J. Adams, Srinivas Ramaswamy, Audrey Wanger, Richard Frothingham, Hanna Soini, James M. Musser, Complex Transmission Dynamics of Clonally Related Virulent Mycobacterium tuberculosis Associated with Barhopping by Predominantly Human Immunodeficiency Virus-Positive Gay Men The Journal of Infectious Diseases. ,vol. 180, pp. 1245- 1251 ,(1999) , 10.1086/314991
A.S Klovdahl, E.A Graviss, A Yaganehdoost, M.W Ross, A Wanger, G.J Adams, J.M Musser, Networks and tuberculosis: an undetected community outbreak involving public places Social Science & Medicine. ,vol. 52, pp. 681- 694 ,(2001) , 10.1016/S0277-9536(00)00170-2
Ted Cohen, Caroline Colijn, Bryson Finklea, Megan Murray, Exogenous re-infection and the dynamics of tuberculosis epidemics: local effects in a network model of transmission. Journal of the Royal Society Interface. ,vol. 4, pp. 523- 531 ,(2007) , 10.1098/RSIF.2006.0193