BUSCO: Assessing Genome Assembly and Annotation Completeness.

作者: Mathieu Seppey , Mosè Manni , Evgeny M. Zdobnov

DOI: 10.1007/978-1-4939-9173-0_14

关键词:

摘要: … problems in sequencing data that are likely to hamper the quality of the … data quality in terms of completeness of gene content. This is a crucial consideration that also affects data …

参考文章(24)
Ian Korf, Gene finding in novel genomes BMC Bioinformatics. ,vol. 5, pp. 59- 59 ,(2004) , 10.1186/1471-2105-5-59
Mark Borodovsky, Alex Lomsadze, Eukaryotic Gene Prediction Using GeneMark.hmm-E and GeneMark-ES Current protocols in human genetics. ,vol. 35, ,(2011) , 10.1002/0471250953.BI0406S35
Hadas Keren, Galit Lev-Maor, Gil Ast, Alternative splicing and evolution: diversification, exon definition and function Nature Reviews Genetics. ,vol. 11, pp. 345- 355 ,(2010) , 10.1038/NRG2776
G. Parra, K. Bradnam, I. Korf, CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics. ,vol. 23, pp. 1061- 1067 ,(2007) , 10.1093/BIOINFORMATICS/BTM071
R. Chikhi, P. Medvedev, Informed and automated k-mer size selection for genome assembly Bioinformatics. ,vol. 30, pp. 31- 37 ,(2014) , 10.1093/BIOINFORMATICS/BTT310
Martin Hunt, Taisei Kikuchi, Mandy Sanders, Chris Newbold, Matthew Berriman, Thomas D Otto, REAPR: a universal tool for genome assembly evaluation. Genome Biology. ,vol. 14, pp. 1- 10 ,(2013) , 10.1186/GB-2013-14-5-R47
Robert M. Waterhouse, Evgeny M. Zdobnov, Evgenia V. Kriventseva, Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi. Genome Biology and Evolution. ,vol. 3, pp. 75- 86 ,(2011) , 10.1093/GBE/EVQ083
Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason Papadopoulos, Kevin Bealer, Thomas L Madden, BLAST+: architecture and applications. BMC Bioinformatics. ,vol. 10, pp. 421- 421 ,(2009) , 10.1186/1471-2105-10-421