Transient overexpression of DNA adenine methylase enables efficient and mobile genome engineering with reduced off-target effects

作者: Rebecca M. Lennen , Annika I. Nilsson Wallin , Margit Pedersen , Mads Bonde , Hao Luo

DOI: 10.1093/NAR/GKV1090

关键词:

摘要: Homologous recombination of single-stranded oligonucleotides is a highly efficient process for introducing precise mutations into the genome of E. coli and other organisms when mismatch repair (MMR) is disabled. This can result in the rapid accumulation of off-target mutations that can mask desired phenotypes, especially when selections need to be employed following the generation of combinatorial libraries. While the use of inducible mutator phenotypes or other MMR evasion tactics have proven useful, reported methods …

参考文章(28)
James A. Sawitzke, Lynn C. Thomason, Mikhail Bubunenko, Xintian Li, Nina Costantino, Donald L. Court, Recombineering: highly efficient in vivo genetic engineering using single-strand oligos. Methods in Enzymology. ,vol. 533, pp. 157- 177 ,(2013) , 10.1016/B978-0-12-420067-8.00010-6
Lynn C Thomason, James A Sawitzke, Xintian Li, Nina Costantino, Donald L Court, None, Recombineering: Genetic Engineering in Bacteria Using Homologous Recombination Current protocols in molecular biology. ,vol. 106, ,(2003) , 10.1002/0471142727.MB0116S78
Hanjing Yang, Erika Wolff, Mandy Kim, Amy Diep, Jeffrey H Miller, None, Identification of mutator genes and mutational pathways in Escherichia coli using a multicopy cloning approach Molecular Microbiology. ,vol. 53, pp. 283- 295 ,(2004) , 10.1111/J.1365-2958.2004.04125.X
Mads T Bonde, Sriram Kosuri, Hans J Genee, Kira Sarup-Lytzen, George M Church, Morten OA Sommer, Harris H Wang, None, Direct Mutagenesis of Thousands of Genomic Targets using Microarray-derived Oligonucleotides ACS Synthetic Biology. ,vol. 4, pp. 17- 22 ,(2015) , 10.1021/SB5001565
H. M. Ellis, D. Yu, T. DiTizio, D. L. Court, High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides Proceedings of the National Academy of Sciences of the United States of America. ,vol. 98, pp. 6742- 6746 ,(2001) , 10.1073/PNAS.121164898
Chiam Yu Ng, Iman Farasat, Costas D. Maranas, Howard M. Salis, Rational design of a synthetic Entner-Doudoroff pathway for improved and controllable NADPH regeneration. Metabolic Engineering. ,vol. 29, pp. 86- 96 ,(2015) , 10.1016/J.YMBEN.2015.03.001
James D. Winkler, Carlos Garcia, Michelle Olson, Emily Callaway, Katy C. Kao, Evolved osmotolerant Escherichia coli mutants frequently exhibit defective N-acetylglucosamine catabolism and point mutations in cell shape-regulating protein MreB Applied and Environmental Microbiology. ,vol. 80, pp. 3729- 3740 ,(2014) , 10.1128/AEM.00499-14
B. W. Glickman, M. Radman, Escherichia coli mutator mutants deficient in methylation-instructed DNA mismatch correction. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 77, pp. 1063- 1067 ,(1980) , 10.1073/PNAS.77.2.1063
Farren J. Isaacs, Peter A. Carr, Harris H. Wang, Marc J. Lajoie, Bram Sterling, Laurens Kraal, Andrew C. Tolonen, Tara A. Gianoulis, Daniel B. Goodman, Nikos B. Reppas, Christopher J. Emig, Duhee Bang, Samuel J. Hwang, Michael C. Jewett, Joseph M. Jacobson, George M. Church, Precise manipulation of chromosomes in vivo enables genome-wide codon replacement. Science. ,vol. 333, pp. 348- 353 ,(2011) , 10.1126/SCIENCE.1205822