Molecular and stable isotope methods to detect and measure anaerobic ammonium oxidation (anammox) in aquatic ecosystems.

作者: Bongkeun Song , Craig R. Tobias

DOI: 10.1016/B978-0-12-386489-5.00003-8

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摘要: Numerous microbial processes transform nitrogen (N) but three anaerobic respiratory pathways remove fixed N from the environment: denitrification (nitrate conversion to N(2)), ammonium oxidation (anammox; plus nitrite and dependent methane (nitrite N(2)). Nitrification becomes a part of removal as supplier (NO(2)(-)) nitrate (NO(3)(-)) anammox denitrifying bacteria in anoxic water sediments. It is important detect measure understand biogeochemical cycle estimate potential aquatic ecosystems. Denitrification has been extensively studied many ecosystems examine diversity spatial temporal dynamics communities well its importance regional global cycles. Nitrite was recently discovered new pathway removing just started different Anammox undergone limited examination, although number studies continuously increasing. There are questions remaining order factors controlling activities community structures This chapter reviews both molecular stable isotope methods sediments water.

参考文章(84)
D.B. Nedwell, T.D. Jickells, M. Trimmer, R. Sanders, Nutrients in Estuaries Advances in Ecological Research. ,vol. 29, pp. 43- 92 ,(1999) , 10.1016/S0065-2504(08)60191-9
Jeffrey C. Cornwell, W. Michael Kemp, Todd M. Kana, Denitrification in coastal ecosystems: methods, environmental controls, and ecosystem level controls, a review Aquatic Ecology. ,vol. 33, pp. 41- 54 ,(1999) , 10.1023/A:1009921414151
Boran Kartal, Laura Van Niftrik, Jayne Rattray, Jack L.C.M. Van De Vossenberg, Markus C. Schmid, Jaap Sinninghe Damsté, Mike S.M. Jetten, Marc Strous, Candidatus ‘Brocadia fulgida’: an autofluorescent anaerobic ammonium oxidizing bacterium FEMS Microbiology Ecology. ,vol. 63, pp. 46- 55 ,(2008) , 10.1111/J.1574-6941.2007.00408.X
JC Nicholls, M Trimmer, Widespread occurrence of the anammox reaction in estuarine sediments Aquatic Microbial Ecology. ,vol. 55, pp. 105- 113 ,(2009) , 10.3354/AME01285
Martin G. Klotz, Markus C. Schmid, Marc Strous, Huub J. M. op den Camp, Mike S. M. Jetten, Alan B. Hooper, Evolution of an octahaem cytochrome c protein family that is key to aerobic and anaerobic ammonia oxidation by bacteria. Environmental Microbiology. ,vol. 10, pp. 3150- 3163 ,(2008) , 10.1111/J.1462-2920.2008.01733.X
Marko Pavlekovic, Markus C. Schmid, Nadja Schmider-Poignee, Stefan Spring, Martin Pilhofer, Tobias Gaul, Mark Fiandaca, Frank E. Löffler, Mike Jetten, K.-H. Schleifer, Natuschka M. Lee, Optimization of three FISH procedures for in situ detection of anaerobic ammonium oxidizing bacteria in biological wastewater treatment Journal of Microbiological Methods. ,vol. 78, pp. 119- 126 ,(2009) , 10.1016/J.MIMET.2009.04.003
Dirk V. Erler, Bradley D. Eyre, Leigh Davison, The contribution of anammox and denitrification to sediment N2 production in a surface flow constructed wetland. Environmental Science & Technology. ,vol. 42, pp. 9144- 9150 ,(2008) , 10.1021/ES801175T
Markus Schmid, Stephan Schmitz-Esser, Mike Jetten, Michael Wagner, 16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: implications for phylogeny and in situ detection. Environmental Microbiology. ,vol. 3, pp. 450- 459 ,(2001) , 10.1046/J.1462-2920.2001.00211.X