Study of binding energies using DFT methods, vibrational frequencies and solvent effects in the interaction of silver ions with uracil tautomers

作者: Hossein Tavakol

DOI: 10.1016/J.ARABJC.2012.12.007

关键词:

摘要: Abstract Relative energies and optimized structures of uracil tautomers their complexes with silver ions were obtained using B3LYP calculations more properties investigated AIM NBO calculations. The interactions between all in different ways investigated. Nine for (U) twenty U-Ag+ considered this study. IR spectra three most stable graphically presented, showing significant differences spectra. Analyzing the revealed that frequency C O π-bond near ion increases it decreased while being away from ion. di-keto tautomer (pyrimidine-2,4(1H,3H)-dione) is but are not because they coordinated to only via oxygen atom. Moreover, binding gas phase solvents obtained. In except water, increase solvent’s dielectric constant, energy decreased. A linear-like relationship was found stretching vibrations U-Ag+. (based on atom molecular theory) values at critical points confirm effective interaction or nitrogen atoms tautomers. Natural bond orbital (NBO) employed obtain charge transfer ions. At last, UV–Vis absorptions NMR chemical shifts two calculated compared experimental data.

参考文章(67)
A. Chowdhury, F. Huq, H. Cheng, Interaction between Ag+, nucleobases and nucleotides in solution Asian Journal of Chemistry. ,vol. 18, pp. 37- 44 ,(2006)
Andrzej Syguła, Andrzej Buda, MNDO study of the tautomers of nucleic bases: Part II. Adenine and guanine Journal of Molecular Structure-theochem. ,vol. 92, pp. 267- 277 ,(1983) , 10.1016/0022-2860(83)90368-X
F Richard, R Bader, Atoms in molecules : a quantum theory Clarendon Press. ,(1990)
M Futamata, Y Maruyama, M Ishikawa, Microscopic morphology and SERS activity of Ag colloidal particles Vibrational Spectroscopy. ,vol. 30, pp. 17- 23 ,(2002) , 10.1016/S0924-2031(02)00034-6
S.X. Tian, C.F. Zhang, Z.J. Zhang, X.J. Chen, K.Z. Xu, HOW MANY URACIL TAUTOMERS THERE ARE? DENSITY FUNCTIONAL STUDIES OF STABILITY ORDERING OF TAUTOMERS Chemical Physics. ,vol. 242, pp. 217- 225 ,(1999) , 10.1016/S0301-0104(99)00009-9
I. V. Chernyshova, J. E. Kontros, P. P. Markush, O. B. Shpenik, Excitation of lowest electronic states of the uracil molecule by slow electrons Optics and Spectroscopy. ,vol. 113, pp. 5- 8 ,(2012) , 10.1134/S0030400X12070077
Yoshihiro Maruyama, Mitsuru Ishikawa, Masayuki Futamata, Surface-Enhanced Raman Scattering of Single Adenine Molecules on Silver Colloidal Particles Chemistry Letters. ,vol. 30, pp. 834- 835 ,(2001) , 10.1246/CL.2001.834
Mahmoud Mirzaei, Hamid R. Kalhor, Nasser L. Hadipour, Covalent hybridization of CNT by thymine and uracil: A computational study Journal of Molecular Modeling. ,vol. 17, pp. 695- 699 ,(2011) , 10.1007/S00894-010-0771-Z
Aditya Bhan, Yogesh V. Joshi, W. Nicholas Delgass, Kendall T. Thomson, DFT Investigation of alkoxide formation from olefins in H-ZSM-5 Journal of Physical Chemistry B. ,vol. 107, pp. 10476- 10487 ,(2003) , 10.1021/JP034382H