Draft genome sequence of a novel Lactobacillus salivarius strain isolated from piglet
作者： D. A. MacKenzie , K. McLay , S. Roos , J. Walter , D. Swarbreck
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摘要: ABSTRACT Lactobacillus salivarius is part of the vertebrate indigenous microbiota gastrointestinal tract, oral cavity, and milk. The properties associated with some L. strains have led to their use as probiotics. Here we describe draft genome pig isolate cp400, providing insights into host-niche specialization.
sci-hub.se 参考文章(14)
J. T. Simpson, K. Wong, S. D. Jackman, J. E. Schein, S. J.M. Jones, I. Birol, ABySS: A parallel assembler for short read sequence data Genome Research. ,vol. 19, pp. 1117- 1123 ,(2009) , 10.1101/GR.089532.108
Thomas D. Leser, Joanna Z. Amenuvor, Tim K. Jensen, Rikke H. Lindecrona, Mette Boye, Kristian M�ller, Culture-Independent Analysis of Gut Bacteria: the Pig Gastrointestinal Tract Microbiota Revisited Applied and Environmental Microbiology. ,vol. 68, pp. 673- 690 ,(2002) , 10.1128/AEM.68.2.673-690.2002
Eileen F. O’ Shea, Paula M. O’ Connor, Emma J. Raftis, Paul W. O’ Toole, Catherine Stanton, Paul D. Cotter, R. Paul Ross, Colin Hill, Subspecies diversity in bacteriocin production by intestinalLactobacillus salivariusstrains Gut Microbes. ,vol. 3, pp. 468- 473 ,(2012) , 10.4161/GMIC.21417
Phaik Lyn Oh, Andrew K Benson, Daniel A Peterson, Prabhu B Patil, Etsuko N Moriyama, Stefan Roos, Jens Walter, Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution. The ISME Journal. ,vol. 4, pp. 377- 387 ,(2010) , 10.1038/ISMEJ.2009.123
S. Messaoudi, M. Manai, G. Kergourlay, H. Prévost, N. Connil, J.-M. Chobert, X. Dousset, Lactobacillus salivarius: Bacteriocin and probiotic activity Food Microbiology. ,vol. 36, pp. 296- 304 ,(2013) , 10.1016/J.FM.2013.05.010
Olof Emanuelsson, Søren Brunak, Gunnar von Heijne, Henrik Nielsen, Locating proteins in the cell using TargetP, SignalP and related tools Nature Protocols. ,vol. 2, pp. 953- 971 ,(2007) , 10.1038/NPROT.2007.131
Arthur L. Delcher, Kirsten A. Bratke, Edwin C. Powers, Steven L. Salzberg, Identifying bacterial genes and endosymbiont DNA with Glimmer Bioinformatics. ,vol. 23, pp. 673- 679 ,(2007) , 10.1093/BIOINFORMATICS/BTM009
Eoin Barrett, Maria Hayes, Paula O'Connor, Gillian Gardiner, Gerald F. Fitzgerald, Catherine Stanton, R. Paul Ross, Colin Hill, Salivaricin P, one of a family of two-component antilisterial bacteriocins produced by intestinal isolates of Lactobacillus salivarius. Applied and Environmental Microbiology. ,vol. 73, pp. 3719- 3723 ,(2007) , 10.1128/AEM.00666-06
John Besemer, Alexandre Lomsadze, Mark Borodovsky, GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions Nucleic Acids Research. ,vol. 29, pp. 2607- 2618 ,(2001) , 10.1093/NAR/29.12.2607
S. Hunter, R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bork, U. Das, L. Daugherty, L. Duquenne, R. D. Finn, J. Gough, D. Haft, N. Hulo, D. Kahn, E. Kelly, A. Laugraud, I. Letunic, D. Lonsdale, R. Lopez, M. Madera, J. Maslen, C. McAnulla, J. McDowall, J. Mistry, A. Mitchell, N. Mulder, D. Natale, C. Orengo, A. F. Quinn, J. D. Selengut, C. J. A. Sigrist, M. Thimma, P. D. Thomas, F. Valentin, D. Wilson, C. H. Wu, C. Yeats, InterPro: the integrative protein signature database Nucleic Acids Research. ,vol. 37, pp. 211- 215 ,(2009) , 10.1093/NAR/GKN785