Identification of 8-Digit HLA-A, -B, -C, and -DRB1 Allele and Haplotype Frequencies in Koreans Using the One Lambda AllType Next-Generation Sequencing Kit.

作者: Wonho Choe , Jeong-Don Chae , John Jeongseok Yang , Sang-Hyun Hwang , Sung-Eun Choi

DOI: 10.3343/ALM.2021.41.3.310

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摘要: … Recently, there have been several reports on successful implementation of next-generation sequencing (NGS) in HLA typing [6-8]. NGS has been reported to reduce ambiguity largely …

参考文章(26)
José AM Borghans, Can Keşmir, Rob J De Boer, None, MHC diversity in Individuals and Populations In Silico Immunology. pp. 177- 195 ,(2007) , 10.1007/978-0-387-39241-7_10
A. H. Hajeer, M. A. Al Balwi, F. Aytül Uyar, Y. AlHaidan, A. AlAbdulrahman, I. Al Abdulkareem, M. Al Jumah, HLA‐A, ‐B, ‐C, ‐DRB1 and ‐DQB1 allele and haplotype frequencies in Saudis using next generation sequencing technique Tissue Antigens. ,vol. 82, pp. 252- 258 ,(2013) , 10.1111/TAN.12200
T. Shiina, S. Suzuki, Y. Ozaki, H. Taira, E. Kikkawa, A. Shigenari, A. Oka, T. Umemura, S. Joshita, O. Takahashi, Y. Hayashi, M. Paumen, Y. Katsuyama, S. Mitsunaga, M. Ota, J. K. Kulski, H. Inoko, Super high resolution for single molecule‐sequence‐based typing of classical HLA loci at the 8‐digit level using next generation sequencers Tissue Antigens. ,vol. 80, pp. 305- 316 ,(2012) , 10.1111/J.1399-0039.2012.01941.X
Hongzhu Qu, Xiangdong Fang, A Brief Review on the Human Encyclopedia of DNA Elements (ENCODE) Project Genomics, Proteomics & Bioinformatics. ,vol. 11, pp. 135- 141 ,(2013) , 10.1016/J.GPB.2013.05.001
Rachel L Erlich, Xiaoming Jia, Scott Anderson, Eric Banks, Xiaojiang Gao, Mary Carrington, Namrata Gupta, Mark A DePristo, Matthew R Henn, Niall J Lennon, Paul IW de Bakker, Next-generation sequencing for HLA typing of class I loci BMC Genomics. ,vol. 12, pp. 42- 42 ,(2011) , 10.1186/1471-2164-12-42
R. K. Saiki, P. S. Walsh, C. H. Levenson, H. A. Erlich, Genetic analysis of amplified DNA with immobilized sequence-specific oligonucleotide probes Proceedings of the National Academy of Sciences of the United States of America. ,vol. 86, pp. 6230- 6234 ,(1989) , 10.1073/PNAS.86.16.6230
M. Laforet, N. Froelich, A. Parissladis, H. Bausinger, B. Pfeiffer, M.-M. Tongio, An intronic mutation responsible for a low level of expression of an HLA-A*24 allele. Tissue Antigens. ,vol. 50, pp. 340- 346 ,(1997) , 10.1111/J.1399-0039.1997.TB02884.X
Philip K Ehrenberg, Aviva Geretz, Karen M Baldwin, Richard Apps, Victoria R Polonis, Merlin L Robb, Jerome H Kim, Nelson L Michael, Rasmi Thomas, High-throughput multiplex HLA genotyping by next-generation sequencing using multi-locus individual tagging BMC Genomics. ,vol. 15, pp. 864- 864 ,(2014) , 10.1186/1471-2164-15-864
Dominique Charron, Ryad Tamouza, Nahed El Kassar, Veronique Schaeffer, Etienne Carbonnelle, Zohreh Tatari, François Marzais, Catherine Fortier, Jean-Claude Poirier, Khalid Sadki, Francoise Bernaudin, Antoine Toubert, Rajagopal Krishnamoorthy, A novel HLA-B∗39 allele (HLA-B∗3916) due to a rare mutation causing cryptic splice site activation Human Immunology. ,vol. 61, pp. 467- 473 ,(2000) , 10.1016/S0198-8859(00)00108-7