The NANCI–Nkx2.1 gene duplex buffers Nkx2.1 expression to maintain lung development and homeostasis

作者: Michael J. Herriges , David J. Tischfield , Zheng Cui , Michael P. Morley , Yumiao Han

DOI: 10.1101/GAD.298018.117

关键词:

摘要: A subset of long noncoding RNAs (lncRNAs) is spatially correlated with transcription factors (TFs) across the genome, but how these lncRNA-TF gene duplexes regulate tissue development and homeostasis unclear. We identified a feedback loop within NANCI (Nkx2.1-associated intergenic RNA)-Nkx2.1 duplex that essential for buffering Nkx2.1 expression, lung epithelial cell identity, homeostasis. Within this locus, directly inhibits NANCI, while acts in cis to promote transcription. Although loss alone does not adversely affect development, concurrent heterozygous mutations both leads persistent deficiency reprogramming cells posterior endoderm fate. This disruption NANCI-Nkx2.1 results defective perinatal innate immune response, damage, progressive degeneration adult lung. These data point mechanism which lncRNAs act as rheostats loci buffer TF thereby maintaining tissue-specific cellular identity during postnatal

参考文章(50)
Christian E. Overgaard, Barbara Schlingmann, StevenClaude Dorsainvil White, Christina Ward, Xian Fan, Snehasikta Swarnakar, Lou Ann S. Brown, David M. Guidot, Michael Koval, The relative balance of GM-CSF and TGF-β1 regulates lung epithelial barrier function American Journal of Physiology-lung Cellular and Molecular Physiology. ,vol. 308, ,(2015) , 10.1152/AJPLUNG.00042.2014
Vinh T Dang, Karin S Kassahn, Andrés Esteban Marcos, Mark A Ragan, Identification of human haploinsufficient genes and their genomic proximity to segmental duplications European Journal of Human Genetics. ,vol. 16, pp. 1350- 1357 ,(2008) , 10.1038/EJHG.2008.111
Jeffrey A Whitsett, Theresa Alenghat, Respiratory epithelial cells orchestrate pulmonary innate immunity Nature Immunology. ,vol. 16, pp. 27- 35 ,(2015) , 10.1038/NI.3045
Mitchell Guttman, Ido Amit, Manuel Garber, Courtney French, Michael F. Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W. Carey, John P. Cassady, Moran N. Cabili, Rudolf Jaenisch, Tarjei S. Mikkelsen, Tyler Jacks, Nir Hacohen, Bradley E. Bernstein, Manolis Kellis, Aviv Regev, John L. Rinn, Eric S. Lander, Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals Nature. ,vol. 458, pp. 223- 227 ,(2009) , 10.1038/NATURE07672
Tomoya Yamaguchi, Yasuyuki Hosono, Kiyoshi Yanagisawa, Takashi Takahashi, NKX2-1/TTF-1: An Enigmatic Oncogene that Functions as a Double-Edged Sword for Cancer Cell Survival and Progression Cancer Cell. ,vol. 23, pp. 718- 723 ,(2013) , 10.1016/J.CCR.2013.04.002
Orly Wapinski, Howard Y. Chang, Long noncoding RNAs and human disease Trends in Cell Biology. ,vol. 21, pp. 354- 361 ,(2011) , 10.1016/J.TCB.2011.04.001
Xiao-Yang Wang, Abeba Demelash, Heungnam Kim, Sandra Jensen-Taubman, El Habib Dakir, Laurent Ozbun, Michael J. Birrer, R. Ilona Linnoila, Matrilysin-1 mediates bronchiolization of alveoli, a potential premalignant change in lung cancer. American Journal of Pathology. ,vol. 175, pp. 592- 604 ,(2009) , 10.2353/AJPATH.2009.080461
Eric L. Snyder, Hideo Watanabe, Margaret Magendantz, Sebastian Hoersch, Tiffany A. Chen, Diana G. Wang, Denise Crowley, Charles A. Whittaker, Matthew Meyerson, Shioko Kimura, Tyler Jacks, Nkx2-1 Represses a Latent Gastric Differentiation Program in Lung Adenocarcinoma Molecular Cell. ,vol. 50, pp. 185- 199 ,(2013) , 10.1016/J.MOLCEL.2013.02.018
Moritz Eißmann, Tony Gutschner, Monika Hämmerle, Stefan Günther, Maïwen Caudron-Herger, Matthias Groß, Peter Schirmacher, Karsten Rippe, Thomas Braun, Martin Zörnig, Sven Diederichs, Loss of the abundant nuclear non-coding RNA MALAT1 is compatible with life and development. RNA Biology. ,vol. 9, pp. 1076- 1087 ,(2012) , 10.4161/RNA.21089
Kevin Czaplinski, Thomas Köcher, Malgorzata Schelder, Alexandra Segref, Matthias Wilm, Iain W. Mattaj, Identification of 40LoVe, a Xenopus hnRNP D Family Protein Involved in Localizing a TGF-β-Related mRNA during Oogenesis Developmental Cell. ,vol. 8, pp. 505- 515 ,(2005) , 10.1016/J.DEVCEL.2005.01.012