Genome assembly provides insights into the genome evolution and flowering regulation of orchardgrass

作者: Linkai Huang , Guangyan Feng , Haidong Yan , Zhongren Zhang , Bradley Shaun Bushman

DOI: 10.1111/PBI.13205

关键词:

摘要: Orchardgrass (Dactylis glomerata L.) is an important forage grass for cultivating livestock worldwide. Here, we report an~ 1.84‐Gb chromosome‐scale diploid genome assembly of orchardgrass, with a contig N50 of 0.93 Mb, a scaffold N50 of 6.08 Mb and a super‐scaffold N50 of 252.52 Mb, which is the first chromosome‐scale assembled genome of a cool‐season forage grass. The genome includes 40 088 protein‐coding genes, and 69% of the assembled sequences are transposable elements, with long terminal repeats (LTRs) being …

参考文章(133)
Nicholas H. Putnam, Brendan L. O'Connell, Jonathan C. Stites, Brandon J. Rice, Marco Blanchette, Robert Calef, Christopher J. Troll, Andrew Fields, Paul D. Hartley, Charles W. Sugnet, David Haussler, Daniel S. Rokhsar, Richard E. Green, Chromosome-scale shotgun assembly using an in vitro method for long-range linkage Genome Research. ,vol. 26, pp. 342- 350 ,(2016) , 10.1101/GR.193474.115
Lydia Gramzow, Günter Theißen, Phylogenomics reveals surprising sets of essential and dispensable clades of MIKC(c)-group MADS-box genes in flowering plants. Journal of Experimental Zoology. ,vol. 324, pp. 353- 362 ,(2015) , 10.1002/JEZ.B.22598
David J. Gibson, Grasses and Grassland Ecology ,(2009)
Benedikt Drosse, Chiara Campoli, Aman Mulki, Maria von Korff, Genetic Control of Reproductive Development Biotechnological Approaches to Barley Improvement. pp. 81- 99 ,(2014) , 10.1007/978-3-662-44406-1_5
Geofrey Kawube, Titus Alicai, Bramwel Wanjala, Moses Njahira, Juma Awalla, Robert Skilton, Genetic diversity in Napier grass (Pennisetum purpureum) assessed by SSR markers. The Journal of Agricultural Science. ,vol. 7, pp. 147- 155 ,(2015) , 10.5539/JAS.V7N7P147
Paula Suárez-López, Kay Wheatley, Frances Robson, Hitoshi Onouchi, Federico Valverde, George Coupland, CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis Nature. ,vol. 410, pp. 1116- 1120 ,(2001) , 10.1038/35074138
Robert D. Finn, Jody Clements, William Arndt, Benjamin L. Miller, Travis J. Wheeler, Fabian Schreiber, Alex Bateman, Sean R. Eddy, HMMER web server: 2015 update Nucleic Acids Research. ,vol. 43, ,(2015) , 10.1093/NAR/GKV397
Peiyue Li, Hui Qian, Ken W. F. Howard, Jianhua Wu, Building a new and sustainable “Silk Road economic belt” Environmental Earth Sciences. ,vol. 74, pp. 7267- 7270 ,(2015) , 10.1007/S12665-015-4739-2
Milagros Zaballos, Arantxa López-López, Lise Ovreas, Sergio Galán Bartual, Giuseppe D'Auria, Jose Carlos Alba, Boris Legault, Ravindra Pushker, Frida Lise Daae, Francisco Rodríguez-Valera, Comparison of prokaryotic diversity at offshore oceanic locations reveals a different microbiota in the Mediterranean Sea. FEMS Microbiology Ecology. ,vol. 56, pp. 389- 405 ,(2006) , 10.1111/J.1574-6941.2006.00060.X