Target Profile Prediction and Practical Evaluation of a Biginelli-Type Dihydropyrimidine Compound Library

作者: Petra Schneider , Katharina Stutz , Ladina Kasper , Sarah Haller , Michael Reutlinger

DOI: 10.3390/PH4091236

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摘要: We present a self-organizing map (SOM) approach to predicting macromolecular targets for combinatorial compound libraries. The aim was study the usefulness of SOM in combination with topological pharmacophore representation (CATS) selecting biologically active compounds from virtual collection, taking multi-component Biginelli dihydropyrimidine reaction as an example. synthesized candidate this library, which model suggested inhibitory activity against cyclin-dependent kinase 2 (CDK2) and other kinases. prediction confirmed vitro panel assay comprising 48 human conclude that computational technique may be used ligand-based silico pharmacology studies, off-target prediction, drug re-purposing, thereby complementing receptor-based approaches.

参考文章(57)
Teuvo Kohonen, Self-organized formation of topologically correct feature maps Biological Cybernetics. ,vol. 43, pp. 509- 521 ,(1988) , 10.1007/BF00337288
David Vidal, Ricard Garcia-Serna, Jordi Mestres, Ligand-Based Approaches to In Silico Pharmacology Methods in Molecular Biology. ,vol. 672, pp. 489- 502 ,(2011) , 10.1007/978-1-60761-839-3_19
Igor V. Tetko, Associative neural network. Methods of Molecular Biology. ,vol. 458, pp. 185- 202 ,(2008) , 10.1007/978-1-60327-101-1_10
Gisbert Schneider, Petra Schneider, Navigation in Chemical Space: Ligand‐Based Design of Focused Compound Libraries Wiley‐VCH Verlag GmbH & Co. KGaA. pp. 341- 376 ,(2005) , 10.1002/3527603948.CH13
Didier Rognan, Fragment-Based Approaches and Computer-Aided Drug Discovery Topics in Current Chemistry. ,vol. 317, pp. 201- 222 ,(2011) , 10.1007/128_2011_182
Nicholas Gerard Byrne, David Geraint Owen, High throughput screen ,(1999)
Dharmesh M. Maniyar, Ian T. Nabney, Bruce S. Williams, Andreas Sewing, Data Visualization during the Early Stages of Drug Discovery Journal of Chemical Information and Modeling. ,vol. 46, pp. 1806- 1818 ,(2006) , 10.1021/CI050471A
Tobias Noeske, Britta C. Sasse, Holger Stark, Christopher G. Parsons, Tanja Weil, Gisbert Schneider, Predicting compound selectivity by self-organizing maps: cross-activities of metabotropic glutamate receptor antagonists. ChemMedChem. ,vol. 1, pp. 1066- 1068 ,(2006) , 10.1002/CMDC.200600147