Control-layer optimization for flow-based mVLSI microfluidic biochips

作者: Kai Hu , Trung Anh Dinh , Tsung-Yi Ho , Krishnendu Chakrabarty

DOI: 10.1145/2656106.2656118

关键词:

摘要: Recent advantages in flow-based microfluidic biochips have enabled the emergence of lab-on-a-chip devices for bimolecular recognition and point-of-care disease diagnostics. However, adoption is hampered today by lack computer-aided design tools. Manual procedures not only delay product development but they also inhibit exploitation complexity that possible with current fabrication techniques. In this paper, we present first practical problem formulation automated control-layer VLSI (mVLSI) propose a systematic approach solving problem. Our goal to find an efficient routing solution minimum number control pins. The pressure-propagation delay, intrinsic physical phenomenon mVLSI biochips, minimized order reduce response time valves, decrease pattern set-up time, synchronize valve actuation. Two fabricated five synthetic benchmarks are used evaluate proposed optimization method. Compared manual baseline approach, leads fewer pins, better timing behavior, shorter channel length layer.

参考文章(25)
Jay Yellen, Jonathan Gross, Graph Theory and Its Applications ,(1998)
Y. C. Lim, A. Z. Kouzani, W. Duan, Lab-on-a-chip: a component view Microsystem Technologies-micro-and Nanosystems-information Storage and Processing Systems. ,vol. 16, pp. 1995- 2015 ,(2010) , 10.1007/S00542-010-1141-6
Wajid Hassan Minhass, Paul Pop, Jan Madsen, Felician Stefan Blaga, Architectural synthesis of flow-based microfluidic large-scale integration biochips Proceedings of the 2012 international conference on Compilers, architectures and synthesis for embedded systems - CASES '12. pp. 181- 190 ,(2012) , 10.1145/2380403.2380437
Angela R. Wu, Joseph B. Hiatt, Rong Lu, Joanne L. Attema, Neethan A. Lobo, Irving L. Weissman, Michael F. Clarke, Stephen R. Quake, Automated microfluidic chromatin immunoprecipitation from 2,000 cells Lab on a Chip. ,vol. 9, pp. 1365- 1370 ,(2009) , 10.1039/B819648F
Daniel C. Leslie, Christopher J. Easley, Erkin Seker, James M. Karlinsey, Marcel Utz, Matthew R. Begley, James P. Landers, Frequency-specific flow control in microfluidic circuits with passive elastomeric features Nature Physics. ,vol. 5, pp. 231- 235 ,(2009) , 10.1038/NPHYS1196
Yael Heyman, Amnon Buxboim, Sharon G. Wolf, Shirley S. Daube, Roy H. Bar-Ziv, Cell-free protein synthesis and assembly on a biochip Nature Nanotechnology. ,vol. 7, pp. 374- 378 ,(2012) , 10.1038/NNANO.2012.65
Todd M. Squires, Stephen R. Quake, Microfluidics: Fluid physics at the nanoliter scale Reviews of Modern Physics. ,vol. 77, pp. 977- 1026 ,(2005) , 10.1103/REVMODPHYS.77.977
Rafael Gómez-Sjöberg, Anne A. Leyrat, Dana M. Pirone, Christopher S. Chen, Stephen R. Quake, Versatile, Fully Automated, Microfluidic Cell Culture System Analytical Chemistry. ,vol. 79, pp. 8557- 8563 ,(2007) , 10.1021/AC071311W
W. H. Minhass, P. Pop, J. Madsen, Tsung-Yi Ho, Control synthesis for the flow-based microfluidic large-scale integration biochips asia and south pacific design automation conference. pp. 205- 212 ,(2013) , 10.1109/ASPDAC.2013.6509597