Chapter 5 Biochemical Analyses of Nuclear Receptor‐Dependent Transcription with Chromatin Templates

作者: Donald D. Ruhl , W. Lee Kraus

DOI: 10.1016/S1877-1173(09)87005-1

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摘要: Chromatin, the physiological template for transcription, plays important roles in gene regulation by nuclear receptors (NRs). It can (1) restrict binding of NRs or transcriptional machinery to their genomic targets, (2) serve as a target regulatory posttranslational modifications NR coregulator proteins with histone-directed enzymatic activities, and (3) function scaffold variety transcription-related proteins. The advent vitro "cell-free" systems that accurately recapitulate ligand-dependent transcription chromatin templates has allowed detailed analyses these processes. Biochemical studies have advanced our understanding mechanisms regulation, including role ligands, coregulators, nucleosome remodeling. In addition, they provided new insights about dynamics NR-mediated transcription. This chapter reviews current methodologies assembling, transcribing, analyzing vitro, well information been gained from studies.

参考文章(290)
Alejandra Loyola, Shu He, Santaek Oh, Dewey G McCafferty, Danny Rinberg, Techniques used to study transcription on chromatin templates. Methods in Enzymology. ,vol. 377, pp. 474- 499 ,(2004) , 10.1016/S0076-6879(03)77031-1
Dennis Lohr, Hongda Wang, Ralph Bash, Stuart M. Lindsay, Recognition imaging of chromatin and chromatin-remodeling complexes in the atomic force microscope. Methods of Molecular Biology. ,vol. 464, pp. 123- 138 ,(2008) , 10.1007/978-1-60327-461-6_8
Varykina G. Thackray, Steven K. Nordeen, High-Yield Purification of Functional, Full-Length Steroid Receptor Coactivator 1 Expressed in Insect Cells BioTechniques. ,vol. 32, pp. 260- 263 ,(2002) , 10.2144/02322BM05
C. Gruss, C. Gutierrez, W. C. Burhans, M. L. DePamphilis, T. Koller, J. M. Sogo, Nucleosome assembly in mammalian cell extracts before and after DNA replication. The EMBO Journal. ,vol. 9, pp. 2911- 2922 ,(1990) , 10.1002/J.1460-2075.1990.TB07482.X
Gordon L. Hager, MMTV as a model for gene expression in mammary tissue. Cancer treatment and research. ,vol. 40, pp. 267- 281 ,(1988) , 10.1007/978-1-4613-1733-3_13
H. Gould, Chromatin : a practical approach IRL Press at Oxford University Press. ,(1998)
Edio Maldonado, Ronny Drapkin, Danny Reinberg, Purification of human RNA polymerase II and general transcription factors Methods in Enzymology. ,vol. 274, pp. 72- 100 ,(1996) , 10.1016/S0076-6879(96)74009-0
David L. Stenoien, Kavita Patel, Maureen G. Mancini, Martin Dutertre, Carolyn L. Smith, Bert W. O'Malley, Michael A. Mancini, FRAP reveals that mobility of oestrogen receptor-alpha is ligand- and proteasome-dependent. Nature Cell Biology. ,vol. 3, pp. 15- 23 ,(2001) , 10.1038/35050515
H. Richard-Foy, G. L. Hager, Sequence-specific positioning of nucleosomes over the steroid-inducible MMTV promoter. The EMBO Journal. ,vol. 6, pp. 2321- 2328 ,(1987) , 10.1002/J.1460-2075.1987.TB02507.X
J.F. Elliston, J.M. Beekman, S.Y. Tsai, B.W. O'Malley, M.J. Tsai, Hormone activation of baculovirus expressed progesterone receptors. Journal of Biological Chemistry. ,vol. 267, pp. 5193- 5198 ,(1992) , 10.1016/S0021-9258(18)42750-0