Caloric restriction mitigates age-associated hippocampal differential CG and non-CG methylation.

作者: Arlan Richardson , Laura Otalora , Willard M. Freeman , Jordan A. Jackson , Niran Hadad

DOI: 10.1101/175810

关键词:

摘要: Brain aging is marked by cognitive decline and susceptibility to neurodegeneration. Caloric-restriction (CR) increases neurogenesis, improves memory function, protects from age-associated neurological disorders. Epigenetic mechanisms, including DNA methylation, are vital normal CNS cellular functions, dysregulated with aging. The beneficial effects of CR have been proposed work through epigenetic processes, but this largely unexplored. We therefore tested whether life-long prevents age-related methylation changes in the brain. Hippocampal young (3 months) old (24 male mice fed ad libitum 24 month a 40% calorie-restricted diet 3 months age were examined genome-wide bisulfite sequencing measure base-specificity. Over 27 million CG CH (non-CG) sites examined. Of ~40,000 differentially methylated CGs (dmCGs) ~80,000 CHs (dmCHs) aging, >1/3 prevented found across genomic regulatory regions gene pathways. also caused alterations at not these CR-specific demonstrated different pattern element pathway enrichment than those affected DNMT1 TET3 promoter hypermethylation corresponded reduced expression. These findings demonstrate that attenuates hippocampal changes, combination may contribute neuroprotective CR. prevention consistent pro-longevity working an mechanism.

参考文章(68)
Jun Wang, Lap Ho, Weiping Qin, Anne B. Rocher, Ilana Seror, Nelson Humala, Kruti Maniar, Georgia Dolios, Rong Wang, Patrick R. Hof, Giulio Maria Pasinetti, Caloric restriction attenuates β-amyloid neuropathology in a mouse model of Alzheimer’s disease The FASEB Journal. ,vol. 19, pp. 659- 661 ,(2005) , 10.1096/FJ.04-3182FJE
Ricki J. Colman, T. Mark Beasley, Joseph W. Kemnitz, Sterling C. Johnson, Richard Weindruch, Rozalyn M. Anderson, Caloric restriction reduces age-related and all-cause mortality in rhesus monkeys Nature Communications. ,vol. 5, pp. 3557- 3557 ,(2014) , 10.1038/NCOMMS4557
Dheepa Balasubramanian, Batool Akhtar-Zaidi, Lingyun Song, Cynthia F Bartels, Martina Veigl, Lydia Beard, Lois Myeroff, Kishore Guda, James Lutterbaugh, Joseph Willis, Gregory E Crawford, Sanford D Markowitz, Peter C Scacheri, H3K4me3 inversely correlates with DNA methylation at a large class of non-CpG-island-containing start sites Genome Medicine. ,vol. 4, pp. 47- 47 ,(2012) , 10.1186/GM346
Aaron R. Quinlan, Ira M. Hall, BEDTools: a flexible suite of utilities for comparing genomic features Bioinformatics. ,vol. 26, pp. 841- 842 ,(2010) , 10.1093/BIOINFORMATICS/BTQ033
Daniel R Zerbino, Steven P Wilder, Nathan Johnson, Thomas Juettemann, Paul R Flicek, The Ensembl Regulatory Build Genome Biology. ,vol. 16, pp. 56- 56 ,(2015) , 10.1186/S13059-015-0621-5
Auriel A. Willette, Christopher L. Coe, Ricki J. Colman, Barbara B. Bendlin, Erik K. Kastman, Aaron S. Field, Andrew L. Alexander, David B. Allison, Richard H. Weindruch, Sterling C. Johnson, Calorie restriction reduces psychological stress reactivity and its association with brain volume and microstructure in aged rhesus monkeys. Psychoneuroendocrinology. ,vol. 37, pp. 903- 916 ,(2012) , 10.1016/J.PSYNEUEN.2011.10.006
Agustín F. Fernández, Gustavo F. Bayón, Rocío G. Urdinguio, Estela G. Toraño, María G. García, Antonella Carella, Sandra Petrus-Reurer, Cecilia Ferrero, Pablo Martinez-Camblor, Isabel Cubillo, Javier García-Castro, Jesús Delgado-Calle, Flor M. Pérez-Campo, José A. Riancho, Clara Bueno, Pablo Menéndez, Anouk Mentink, Katia Mareschi, Fabian Claire, Corrado Fagnani, Emanuela Medda, Virgilia Toccaceli, Sonia Brescianini, Sebastián Moran, Manel Esteller, Alexandra Stolzing, Jan de Boer, Lorenza Nisticò, Maria A. Stazi, Mario F. Fraga, H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells Genome Research. ,vol. 25, pp. 27- 40 ,(2015) , 10.1101/GR.169011.113
Jian Feng, Yu Zhou, Susan L Campbell, Thuc Le, En Li, J David Sweatt, Alcino J Silva, Guoping Fan, Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons Nature Neuroscience. ,vol. 13, pp. 423- 430 ,(2010) , 10.1038/NN.2514
Amanda K.E. Hornsby, Yushi T. Redhead, Daniel J. Rees, Michael S.G. Ratcliff, Alex Reichenbach, Timothy Wells, Lewis Francis, Katia Amstalden, Zane B. Andrews, Jeffrey S. Davies, Short-term calorie restriction enhances adult hippocampal neurogenesis and remote fear memory in a Ghsr-dependent manner Psychoneuroendocrinology. ,vol. 63, pp. 198- 207 ,(2016) , 10.1016/J.PSYNEUEN.2015.09.023
Elizabeta Gjoneska, Andreas R. Pfenning, Hansruedi Mathys, Gerald Quon, Anshul Kundaje, Li-Huei Tsai, Manolis Kellis, Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease Nature. ,vol. 518, pp. 365- 369 ,(2015) , 10.1038/NATURE14252