Insights into the binding of intrinsically disordered proteins from molecular dynamics simulation
作者： Christopher M. Baker , Robert B. Best
DOI: 10.1002/WCMS.1167
关键词:
摘要: … of coupled folding and binding using molecular dynamics simulation. We summarize what … models. We also consider the lessons to be learnt from advances in other areas of simulation …
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Michele Vendruscolo, Emanuele Paci, Christopher M. Dobson, Martin Karplus, Three key residues form a critical contact network in a protein folding transition state Nature. ,vol. 409, pp. 641- 645 ,(2001) , 10.1038/35054591
Vladimir N. Uversky, What does it mean to be natively unfolded? European Journal of Biochemistry. ,vol. 269, pp. 2- 12 ,(2002) , 10.1046/J.0014-2956.2001.02649.X
Fang Qin, Yue Chen, Yi-Xue Li, Hai-Feng Chen, Induced fit for mRNA/TIS11d complex The Journal of Chemical Physics. ,vol. 131, pp. 115103- 115103 ,(2009) , 10.1063/1.3224126
Jörg Gsponer, M. Madan Babu, The rules of disorder or why disorder rules. Progress in Biophysics & Molecular Biology. ,vol. 99, pp. 94- 103 ,(2009) , 10.1016/J.PBIOMOLBIO.2009.03.001
Jianhan Chen, Charles L. Brooks, Critical importance of length-scale dependence in implicit modeling of hydrophobic interactions. Journal of the American Chemical Society. ,vol. 129, pp. 2444- 2445 ,(2007) , 10.1021/JA068383+
Neil A. Macleod, Patrick Butz, John P. Simons, Guy H. Grant, Christopher M. Baker, George E. Tranter, Electronic Circular Dichroism Spectroscopy of 1‐(R)‐Phenylethanol: The “Sector Rule” Revisited and an Exploration of Solvent Effects Israel Journal of Chemistry. ,vol. 44, pp. 27- 36 ,(2004) , 10.1560/LM77-UMAV-80EF-VYWC
Monika Fuxreiter, Peter Tompa, István Simon, Vladimir N Uversky, Jeffrey C Hansen, Francisco J Asturias, Malleable machines take shape in eukaryotic transcriptional regulation Nature Chemical Biology. ,vol. 4, pp. 728- 737 ,(2008) , 10.1038/NCHEMBIO.127
Athi N. Naganathan, Modesto Orozco, The native ensemble and folding of a protein molten-globule: functional consequence of downhill folding. Journal of the American Chemical Society. ,vol. 133, pp. 12154- 12161 ,(2011) , 10.1021/JA204053N
Jennifer L. Knight, Charles L. Brooks, Surveying implicit solvent models for estimating small molecule absolute hydration free energies Journal of Computational Chemistry. ,vol. 32, pp. 2909- 2923 ,(2011) , 10.1002/JCC.21876
Tanja Mittag, Stephen Orlicky, Wing-Yiu Choy, Xiaojing Tang, Hong Lin, Frank Sicheri, Lewis E. Kay, Mike Tyers, Julie D. Forman-Kay, Dynamic equilibrium engagement of a polyvalent ligand with a single-site receptor. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 105, pp. 17772- 17777 ,(2008) , 10.1073/PNAS.0809222105