Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants

作者: Kranthi Varala , Amy Marshall-Colón , Jacopo Cirrone , Matthew D. Brooks , Angelo V. Pasquino

DOI: 10.1073/PNAS.1721487115

关键词:

摘要: … genome-wide targets of CRF4 in an inducible overexpression transplanta line (CRF4-OX) (… central role that CRF4 plays in the dynamic N response. In planta CRF4-regulated targets are …

参考文章(49)
Anne Krapp, Plant nitrogen assimilation and its regulation: a complex puzzle with missing pieces. Current Opinion in Plant Biology. ,vol. 25, pp. 115- 122 ,(2015) , 10.1016/J.PBI.2015.05.010
Piotr Mirowski, Yann LeCun, Dynamic Factor Graphs for Time Series Modeling european conference on machine learning. pp. 128- 143 ,(2009) , 10.1007/978-3-642-04174-7_9
Yupeng Li, Stephanie A. Pearl, Scott A. Jackson, Gene Networks in Plant Biology: Approaches in Reconstruction and Analysis Trends in Plant Science. ,vol. 20, pp. 664- 675 ,(2015) , 10.1016/J.TPLANTS.2015.06.013
Gustavo Stolovitzky, Robert J. Prill, Andrea Califano, Lessons from the DREAM2 Challenges Annals of the New York Academy of Sciences. ,vol. 1158, pp. 159- 195 ,(2009) , 10.1111/J.1749-6632.2009.04497.X
Allison Gaudinier, Siobhan M. Brady, Mapping Transcriptional Networks in Plants: Data-Driven Discovery of Novel Biological Mechanisms Annual Review of Plant Biology. ,vol. 67, pp. 575- 594 ,(2016) , 10.1146/ANNUREV-ARPLANT-043015-112205
Manpreet S. Katari, Steve D. Nowicki, Felipe F. Aceituno, Damion Nero, Jonathan Kelfer, Lee Parnell Thompson, Juan M. Cabello, Rebecca S. Davidson, Arthur P. Goldberg, Dennis E. Shasha, Gloria M. Coruzzi, Rodrigo A. Gutiérrez, VirtualPlant: A software platform to support Systems Biology research Plant Physiology. ,vol. 152, pp. 500- 515 ,(2010) , 10.1104/PP.109.147025
Stéphane Muños, Céline Cazettes, Cécile Fizames, Frédéric Gaymard, Pascal Tillard, Marc Lepetit, Laurence Lejay, Alain Gojon, Transcript profiling in the chl1-5 mutant of Arabidopsis reveals a role of the nitrate transporter NRT1.1 in the regulation of another nitrate transporter, NRT2.1. The Plant Cell. ,vol. 16, pp. 2433- 2447 ,(2004) , 10.1105/TPC.104.024380
Javier Canales, Tomás C Moyano, Eva Villarroel, Rodrigo A Gutiérrez, None, Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments. Frontiers in Plant Science. ,vol. 5, pp. 22- 22 ,(2014) , 10.3389/FPLS.2014.00022
Mingyi Wang, Jerome Verdier, Vagner A. Benedito, Yuhong Tang, Jeremy D. Murray, Yinbing Ge, Jörg D. Becker, Helena Carvalho, Christian Rogers, Michael Udvardi, Ji He, LegumeGRN: A Gene Regulatory Network Prediction Server for Functional and Comparative Studies PLOS ONE. ,vol. 8, pp. 1- 7 ,(2013) , 10.1371/JOURNAL.PONE.0067434