CorrSieve: software for summarizing and evaluating Structure output.

作者: M.G. CAMPANA , H.V. HUNT , H. JONES , J. WHITE

DOI: 10.1111/J.1755-0998.2010.02917.X

关键词:

摘要: The clustering software Structure has been used extensively to infer population structure in natural populations from multilocus genotype data. Determining meaningful values of K, the assumed number subpopulations is one primary challenges making biological inferences package CorrSieve summarizes output and performs a tests, including both previously reported methods novel ones, help determine K.

参考文章(11)
James Cockram, Jon White, Fiona J Leigh, Vincent J Lea, Elena Chiapparino, David A Laurie, Ian J Mackay, Wayne Powell, Donal M O'Sullivan, Association mapping of partitioning loci in barley BMC Genetics. ,vol. 9, pp. 16- 16 ,(2008) , 10.1186/1471-2156-9-16
R Kaeuffer, D Réale, D W Coltman, D Pontier, Detecting population structure using STRUCTURE software: effect of background linkage disequilibrium Heredity. ,vol. 99, pp. 374- 380 ,(2007) , 10.1038/SJ.HDY.6801010
MELISSA J. HUBISZ, DANIEL FALUSH, MATTHEW STEPHENS, JONATHAN K. PRITCHARD, Inferring weak population structure with the assistance of sample group information. Molecular Ecology Resources. ,vol. 9, pp. 1322- 1332 ,(2009) , 10.1111/J.1755-0998.2009.02591.X
Jonathan K. Pritchard, Matthew Stephens, Peter Donnelly, Inference of population structure using multilocus genotype data Genetics. ,vol. 155, pp. 945- 959 ,(2000) , 10.1093/GENETICS/155.2.945
DANIEL FALUSH, MATTHEW STEPHENS, JONATHAN K. PRITCHARD, Inference of population structure using multilocus genotype data: dominant markers and null alleles Molecular Ecology Notes. ,vol. 7, pp. 574- 578 ,(2007) , 10.1111/J.1471-8286.2007.01758.X
S. A. Tishkoff, F. A. Reed, F. R. Friedlaender, C. Ehret, A. Ranciaro, A. Froment, J. B. Hirbo, A. A. Awomoyi, J.-M. Bodo, O. Doumbo, M. Ibrahim, A. T. Juma, M. J. Kotze, G. Lema, J. H. Moore, H. Mortensen, T. B. Nyambo, S. A. Omar, K. Powell, G. S. Pretorius, M. W. Smith, M. A. Thera, C. Wambebe, J. L. Weber, S. M. Williams, The Genetic Structure and History of Africans and African Americans Science. ,vol. 324, pp. 1035- 1044 ,(2009) , 10.1126/SCIENCE.1172257
Jonathan K. Pritchard, Daniel Falush, Matthew Stephens, Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies Genetics. ,vol. 164, pp. 1567- 1587 ,(2003) , 10.1093/GENETICS/164.4.1567