Extensive Homeostatic T Cell Phenotypic Variation within the Collaborative Cross

作者: Jessica B. Graham , Jessica L. Swarts , Michael Mooney , Gabrielle Choonoo , Sophia Jeng

DOI: 10.1016/J.CELREP.2017.10.093

关键词:

摘要: The Collaborative Cross (CC) is a panel of reproducible recombinant inbred mouse strains with high levels standing genetic variation, affording an unprecedented opportunity to perform experiments in small animal model containing controlled diversity while allowing for replicates. Here, we advance the utility this unique resource for immunology research because it allows both examination and dissection mechanisms behind adaptive immune states mice distinct defined makeups. This approach based on quantitative trait locus mapping: identifying genetically variant genome regions associated phenotypic variance traits interest. Furthermore, CC can be utilized development; have immunophenotypes properties, making them suitable particular diseases infections. describe variations cellular phenotypes across F1 crosses reveal loci responsible several phenotypes.

参考文章(51)
Mary E. Brunkow, Eric W. Jeffery, Kathryn A. Hjerrild, Bryan Paeper, Lisa B. Clark, Sue-Ann Yasayko, J. Erby Wilkinson, David Galas, Steven F. Ziegler, Fred Ramsdell, Disruption of a new forkhead/winged-helix protein, scurfin, results in the fatal lymphoproliferative disorder of the scurfy mouse. Nature Genetics. ,vol. 27, pp. 68- 73 ,(2001) , 10.1038/83784
Sara Mostafavi, Adriana Ortiz-Lopez, Molly A Bogue, Kimie Hattori, Cristina Pop, Daphne Koller, Diane Mathis, Christophe Benoist, David A Blair, Michael L Dustin, Susan A Shinton, Richard R Hardy, Tal Shay, Aviv Regev, Nadia Cohen, Patrick Brennan, Michael Brenner, Francis Kim, Tata Nageswara Rao, Amy Wagers, Tracy Heng, Jeffrey Ericson, Katherine Rothamel, Taras Kreslavsky, Anne Fletcher, Kutlu Elpek, Angelique Bellemare-Pelletier, Deepali Malhotra, Shannon Turley, Jennifer Miller, Brian Brown, Miriam Merad, Emmanuel L Gautier, Claudia Jakubzick, Gwendalyn J Randolph, Paul Monach, Adam J Best, Jamie Knell, Ananda Goldrath, Vladimir Jojic, David Laidlaw, Jim Collins, Roi Gazit, Derrick J Rossi, Nidhi Malhotra, Katelyn Sylvia, Joonsoo Kang, Natalie A Bezman, Joseph C Sun, Gundula Min-Oo, Charlie C Kim, Lewis L Lanier, Immunological Genome Consortium, Variation and Genetic Control of Gene Expression in Primary Immunocytes across Inbred Mouse Strains Journal of Immunology. ,vol. 193, pp. 4485- 4496 ,(2014) , 10.4049/JIMMUNOL.1401280
Feng Zhang, James R. Lupski, Non-coding genetic variants in human disease Human Molecular Genetics. ,vol. 24, ,(2015) , 10.1093/HMG/DDV259
Lisa E. Gralinski, Martin T. Ferris, David L. Aylor, Alan C. Whitmore, Richard Green, Matthew B. Frieman, Damon Deming, Vineet D. Menachery, Darla R. Miller, Ryan J. Buus, Timothy A. Bell, Gary A. Churchill, David W. Threadgill, Michael G. Katze, Leonard McMillan, William Valdar, Mark T. Heise, Fernando Pardo-Manuel de Villena, Ralph S. Baric, Genome Wide Identification of SARS-CoV Susceptibility Loci Using the Collaborative Cross PLOS Genetics. ,vol. 11, pp. e1005504- ,(2015) , 10.1371/JOURNAL.PGEN.1005504
Laura Yates, Fiona McMurray, Youming Zhang, Andy Greenfield, Miriam Moffatt, William Cookson, Charlotte Dean, ENU mutagenesis as a tool for understanding lung development and disease Biochemical Society Transactions. ,vol. 37, pp. 838- 842 ,(2009) , 10.1042/BST0370838
A. L. Rasmussen, A. Okumura, M. T. Ferris, R. Green, F. Feldmann, S. M. Kelly, D. P. Scott, D. Safronetz, E. Haddock, R. LaCasse, M. J. Thomas, P. Sova, V. S. Carter, J. M. Weiss, D. R. Miller, G. D. Shaw, M. J. Korth, M. T. Heise, R. S. Baric, F. P.-M. de Villena, H. Feldmann, M. G. Katze, Host genetic diversity enables Ebola hemorrhagic fever pathogenesis and resistance Science. ,vol. 346, pp. 987- 991 ,(2014) , 10.1126/SCIENCE.1259595
P. D. Holler, T. Yamagata, W. Jiang, M. Feuerer, C. Benoist, D. Mathis, The same genomic region conditions clonal deletion and clonal deviation to the CD8αα and regulatory T cell lineages in NOD versus C57BL/6 mice Proceedings of the National Academy of Sciences of the United States of America. ,vol. 104, pp. 7187- 7192 ,(2007) , 10.1073/PNAS.0701777104
Thomas M. Keane, Leo Goodstadt, Petr Danecek, Michael A. White, Kim Wong, Binnaz Yalcin, Andreas Heger, Avigail Agam, Guy Slater, Martin Goodson, Nicholas A. Furlotte, Eleazar Eskin, Christoffer Nellåker, Helen Whitley, James Cleak, Deborah Janowitz, Polinka Hernandez-Pliego, Andrew Edwards, T. Grant Belgard, Peter L. Oliver, Rebecca E. McIntyre, Amarjit Bhomra, Jérôme Nicod, Xiangchao Gan, Wei Yuan, Louise van der Weyden, Charles A. Steward, Sendu Bala, Jim Stalker, Richard Mott, Richard Durbin, Ian J. Jackson, Anne Czechanski, José Afonso Guerra-Assunção, Leah Rae Donahue, Laura G. Reinholdt, Bret A. Payseur, Chris P. Ponting, Ewan Birney, Jonathan Flint, David J. Adams, Mouse genomic variation and its effect on phenotypes and gene regulation Nature. ,vol. 477, pp. 289- 294 ,(2011) , 10.1038/NATURE10413
Jane Hoyt Buckner, Mechanisms of impaired regulation by CD4+CD25+FOXP3+ regulatory T cells in human autoimmune diseases Nature Reviews Immunology. ,vol. 10, pp. 849- 859 ,(2010) , 10.1038/NRI2889