Inferring Methionine Sulfoxidation and serine Phosphorylation crosstalk from Phylogenetic analyses.

作者: Juan Carlos Aledo

DOI: 10.1186/S12862-017-1017-9

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摘要: The sulfoxidation of methionine residues within the phosphorylation motif protein kinase substrates, may provide a mechanism to couple oxidative signals changes in phosphorylation. Herein, we hypothesize that if pair phosphorylatable-sulfoxidable sites are functionally linked, then they might have been coevolving. To test this hypothesis number site pairs previously detected on human stress-related proteins has subjected analysis using eukaryote ortholog sequences and phylogenetic approach. Overall, results support conclusion eIF2α protein, serine at position 218 oxidation 222, belong same functional network. First, observed data were much better fitted by Markovian models assumed coevolution both sites, with respect their counterparts assuming independent evolution (p-value = 0.003). Second, was robust methods used reconstruct relationship between 233 eukaryotic species analyzed. Third, co-distribution phosphorylatable sulfoxidable these positions showed multiple origins throughout eukaryotes, which further supports view an adaptive value for co-occurrence. Fourth, possibility two be due structure-driven compensatory mutations evaluated. suggested factors other than those merely structural behind coevolution. Finally, modifiable from ataxin-2 (S814-M815), ataxin-2-like (S211-M215) Pumilio homolog 1 (S124-M125), reinforce role phosphorylation-sulfoxidation crosstalk. For four analyzed herein, respective PTM (phosphorylatable methionine) found evolving correlated fashion, suggests relevant crosstalk control translation under stress conditions.

参考文章(56)
Andreas Gallmetzer, Lucia Silvestrini, Thorsten Schinko, Bernd Gesslbauer, Peter Hortschansky, Christoph Dattenböck, María Isabel Muro-Pastor, Andreas Kungl, Axel A. Brakhage, Claudio Scazzocchio, Joseph Strauss, Reversible Oxidation of a Conserved Methionine in the Nuclear Export Sequence Determines Subcellular Distribution and Activity of the Fungal Nitrate Regulator NirA PLOS Genetics. ,vol. 11, pp. e1005297- ,(2015) , 10.1371/JOURNAL.PGEN.1005297
Jan A. Miernyk, Mark L. Johnston, Steve C. Huber, Alejandro Tovar-Méndez, Elizabeth Hoyos, Douglas D. Randall, Oxidation of an Adjacent Methionine Residue Inhibits Regulatory Seryl-Phosphorylation of Pyruvate Dehydrogenase: Proteomics Insights. ,vol. 2009, pp. 15- 22 ,(2009) , 10.4137/PRI.S2799
Liam J. Revell, phytools: an R package for phylogenetic comparative biology (and other things) Methods in Ecology and Evolution. ,vol. 3, pp. 217- 223 ,(2012) , 10.1111/J.2041-210X.2011.00169.X
Clifford Taggart, Daniel Cervantes-Laurean, Geumsoo Kim, Noel G McElvaney, Nancy Wehr, Joel Moss, Rodney L Levine, Oxidation of either Methionine 351 or Methionine 358 in α1-Antitrypsin Causes Loss of Anti-neutrophil Elastase Activity Journal of Biological Chemistry. ,vol. 275, pp. 27258- 27265 ,(2000) , 10.1074/JBC.M004850200
Michael Schieber, Navdeep S. Chandel, ROS Function in Redox Signaling and Oxidative Stress Current Biology. ,vol. 24, pp. R453- R462 ,(2014) , 10.1016/J.CUB.2014.03.034
M. Weigt, R. A. White, H. Szurmant, J. A. Hoch, T. Hwa, Identification of direct residue contacts in protein-protein interaction by message passing. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 106, pp. 67- 72 ,(2009) , 10.1073/PNAS.0805923106
Bart Ghesquière, Veronique Jonckheere, Niklaas Colaert, Joost Van Durme, Evy Timmerman, Marc Goethals, Joost Schymkowitz, Frederic Rousseau, Joël Vandekerckhove, Kris Gevaert, Redox Proteomics of Protein-bound Methionine Oxidation Molecular & Cellular Proteomics. ,vol. 10, ,(2011) , 10.1074/MCP.M110.006866