QM/MM study of the S2 to S3 transition reaction in the oxygen-evolving complex of photosystem II

作者: Mitsuo Shoji , Hiroshi Isobe , Kizashi Yamaguchi

DOI: 10.1016/J.CPLETT.2015.07.039

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摘要: Abstract Catalytic reactions of the proton and electron transfers occurring at oxygen-evolving complex (OEC) photosystem II during S 2 –S 3 transition were investigated by quantum mechanics/molecular mechanics (QM/MM) methodology. Two favorable reaction pathways elucidated. Both start moving Ca-bound water (W3) to vacant Mn(III) coordination left-opened (L) or right-opened (R) form. The former pathway, in which W3 coordinates Mn4 -L form, has lower activation barriers than latter. Thus, easier from Tyr161 phenol anion can be performed.

参考文章(23)
Junko Yano, Vittal Yachandra, Mn4Ca Cluster in Photosynthesis: Where and How Water is Oxidized to Dioxygen Chemical Reviews. ,vol. 114, pp. 4175- 4205 ,(2014) , 10.1021/CR4004874
M. Valiev, E.J. Bylaska, N. Govind, K. Kowalski, T.P. Straatsma, H.J.J. Van Dam, D. Wang, J. Nieplocha, E. Apra, T.L. Windus, W.A. de Jong, NWChem: a comprehensive and scalable open-source solution for large scale molecular simulations Computer Physics Communications. ,vol. 181, pp. 1477- 1489 ,(2010) , 10.1016/J.CPC.2010.04.018
Marius Retegan, Nicholas Cox, Wolfgang Lubitz, Frank Neese, Dimitrios A. Pantazis, The first tyrosyl radical intermediate formed in the S2-S3 transition of photosystem II Physical Chemistry Chemical Physics. ,vol. 16, pp. 11901- 11910 ,(2014) , 10.1039/C4CP00696H
Matthew J. Latimer, Wa O. Yu, Kenneth Sauer, Melvin P. Klein, Vittal K. Yachandra, Wenchuan Liang, Theo A. Roelofs, Roehl M. Cinco, Annette Rompel, Structural Change of the Mn Cluster during the S2→S3 State Transition of the Oxygen-Evolving Complex of Photosystem II. Does It Reflect the Onset of Water/Substrate Oxidation? Determination by Mn X-ray Absorption Spectroscopy. Journal of the American Chemical Society. ,vol. 122, pp. 3399- 3412 ,(2000) , 10.1021/JA992501U
Carina Glöckner, Jan Kern, Matthias Broser, Athina Zouni, Vittal Yachandra, Junko Yano, Structural Changes of the Oxygen-evolving Complex in Photosystem II during the Catalytic Cycle Journal of Biological Chemistry. ,vol. 288, pp. 22607- 22620 ,(2013) , 10.1074/JBC.M113.476622
Per E. M. Siegbahn, O-O bond formation in the S4 state of the oxygen-evolving complex in photosystem II Chemistry: A European Journal. ,vol. 12, pp. 9217- 9227 ,(2006) , 10.1002/CHEM.200600774
N. Cox, M. Retegan, F. Neese, D. A. Pantazis, A. Boussac, W. Lubitz, Electronic structure of the oxygen-evolving complex in photosystem II prior to O-O bond formation Science. ,vol. 345, pp. 804- 808 ,(2014) , 10.1126/SCIENCE.1254910