New Peptides Under the s(ORF)ace of the Genome

作者: Jose I Pueyo , Emile G Magny , Juan P Couso , None

DOI: 10.1016/J.TIBS.2016.05.003

关键词:

摘要: Hundreds, perhaps thousands of previously unidentified functional small peptides could exist in most genomes, but these sequences have been generally overlooked. The discovery genes encoding with important functions different organisms has ignited the interest and led to an increasing amount effort towards their identification. Here, we review advances, both computational biochemical, that are leading way putatively open reading frame (smORFs), as well studies carried out a consequence searches. evidence suggests smORFs form substantial part our encoded variety cellular functions.

参考文章(83)
Vladislava Paharkova, Griselda Alvarez, Hiromi Nakamura, Pinchas Cohen, Kuk-Wha Lee, Rat Humanin is encoded and translated in mitochondria and is localized to the mitochondrial compartment where it regulates ROS production. Molecular and Cellular Endocrinology. ,vol. 413, pp. 96- 100 ,(2015) , 10.1016/J.MCE.2015.06.015
Joel M Chick, Deepak Kolippakkam, David P Nusinow, Bo Zhai, Ramin Rad, Edward L Huttlin, Steven P Gygi, A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides Nature Biotechnology. ,vol. 33, pp. 743- 749 ,(2015) , 10.1038/NBT.3267
Jun Wang, ShengTing Li, Yong Zhang, HongKun Zheng, Zhao Xu, Jia Ye, Jun Yu, Gane Ka-Shu Wong, None, Vertebrate gene predictions and the problem of large genes. Nature Reviews Genetics. ,vol. 4, pp. 741- 749 ,(2003) , 10.1038/NRG1160
Munira A. Basrai, Philip Hieter, Jef D. Boeke, Small open reading frames: beautiful needles in the haystack Genome Research. ,vol. 7, pp. 768- 771 ,(1997) , 10.1101/GR.7.8.768
Martin C Frith, Alistair R Forrest, Ehsan Nourbakhsh, Ken C Pang, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Timothy L Bailey, Sean M Grimmond, PLoS Genetics EIC Wayne Frankel, The abundance of short proteins in the mammalian proteome PLOS Genetics. ,vol. 2, pp. 515- 528 ,(2006) , 10.1371/JOURNAL.PGEN.0020052
Emile G. Magny, Jose Ignacio Pueyo, Frances M.G. Pearl, Miguel Angel Cespedes, Jeremy E. Niven, Sarah A. Bishop, Juan Pablo Couso, Conserved Regulation of Cardiac Calcium Uptake by Peptides Encoded in Small Open Reading Frames Science. ,vol. 341, pp. 1116- 1120 ,(2013) , 10.1126/SCIENCE.1238802
Sarah A. Slavoff, Jinho Heo, Bogdan A. Budnik, Leslyn A. Hanakahi, Alan Saghatelian, A Human Short Open Reading Frame (sORF)-encoded Polypeptide That Stimulates DNA End Joining Journal of Biological Chemistry. ,vol. 289, pp. 10950- 10957 ,(2014) , 10.1074/JBC.C113.533968
Zhong Wang, Mark Gerstein, Michael Snyder, RNA-Seq: a revolutionary tool for transcriptomics Nature Reviews Genetics. ,vol. 10, pp. 57- 63 ,(2009) , 10.1038/NRG2484